Job Description P0AG78 Confidence 99.78% Date Wed Jan 25 15:20:33 GMT 2012 Rank 65 Aligned Residues 260 % Identity 13% Template c3oo6A_ PDB info PDB header:sugar binding protein Chain: A: PDB Molecule:abc transporter binding protein acbh; PDBTitle: crystal structures and biochemical characterization of the bacterial2 solute receptor acbh reveal an unprecedented exclusive substrate3 preference for b-d-galactopyranose Resolution 2.15 Å

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		23	.	.	.	.	.	.	30	.				.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.		.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.																															.
Query SS confidence											.	.	.																															.
Query Sequence		Q	L	L	N	V	S	Y	D	P	.	.	.	T	R	E	L	Y	E	Q	Y	N	K	A	F	S	A	H	W	K	Q	Q	T	G	D	N	V	V	I	R	Q	S	H	.	G	G	S	G	K	Q	A	T	S	V	I	N	G	I	E	A	D	V	V	T	L	A	L	A	Y	D	V	D	A	I	A	E	R	G	R	I	D
Query Conservation											.	.	.																															.
Alig confidence											.	.	.															.	.	.	.													.
Template Conservation																												.	.	.	.
Template Sequence		P	I	T	F	G	S	N	Y	S	D	E	A	P	K	A	A	F	A	S	L	M	Q	Q	A	T	T	.	.	.	.	S	T	T	V	P	V	T	V	N	T	T	D	H	N	T	F	Q	N	N	I	S	N	Y	L	Q	G	T	P	D	S	L	A	T	W	F	A	G	Y	R	L	Q	F	F	A	A	Q	G	L	L	T
Template Known Secondary structure											S																	.	.	.	.																			T							S				S							T								T	T	T		B
Template Predicted Secondary structure																												.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.					.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		99																					100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.						.	.	.	.	.	.	130	.	.	.	.							.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.												.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.												.	.	.	.	.	.
Query Sequence		K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	W	I	K	R	L	P	D	N	S	A	P	Y	T	S	T	I	V	F	L	V	R	K	G	.	.	.	.	.	N	P	K	Q	I	H	D	W	N	D	L	.	.	.	.	.	.	I	K	P	G	V	S	V	I	T	P	N	P	K
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.												.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.												.	.	.	.	.	.
Template Conservation
Template Sequence		P	I	D	D	V	W	D	K	I	G	G	T	F	N	D	A	A	K	S	L	S	K	G	L	D	G	H	Y	Y	L	V	P	L	Y	N	Y	P	W	V	V	F	Y	N	K	S	V	F	Q	S	K	G	Y	E	V	P	A	S	W	E	A	F	I	A	L	A	R	K	M	Q	S	D	G	L	V	P	L	A	F	A	D
Template Known Secondary structure											G	G	G	S							T	T	B		T	T	S		B																							T						B														T	T	S
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.															.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Query Sequence		S	S	G	G	A	R	W	N	Y	L	A	A	W	G	Y	A	L	H	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	N	N	D	Q	A	K	A	Q	D	F	V	R	A	L	Y	K	N	V	E	V	L	D	.	S	G	A	R	G	S	T	N	T	F	V	E	R	G	I	G	D	V	L	I	A	W	E
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.
Template Conservation
Template Sequence		K	D	G	W	P	A	L	G	T	F	D	I	L	N	L	R	I	N	G	Y	D	Y	H	I	K	L	M	K	H	E	V	P	W	T	D	P	G	V	T	K	V	F	D	Q	W	R	E	L	A	A	Y	Q	Q	K	G	A	N	G	R	T	W	Q	D	A	A	K	A	L	E	N	K	Q	A	G	M	M	F	Q	G	S
Template Known Secondary structure		T	T	S	S	T	T												T										T	T	S	S		T	T	S															T	T	B		S	S	G	G	G												T	T	S
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.						.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.		.	.	280	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.																																		.
Query SS confidence																																		.	.	.	.	.																																		.
Query Sequence		N	E	A	L	L	A	A	N	E	L	G	K	D	K	F	E	I	V	T	P	S	E	S	I	L	A	E	P	T	V	S	V	.	.	.	.	.	V	D	K	V	V	E	K	K	G	T	K	E	V	A	E	A	Y	L	K	Y	L	Y	S	P	E	G	Q	E	I	A	A	K	N	.	Y	Y	R	P	R	D	A	E	V
Query Conservation																																		.	.	.	.	.																																		.
Alig confidence																																		.	.	.	.	.																																		.
Template Conservation
Template Sequence		N	Q	V	A	A	N	Y	S	A	K	N	L	P	D	L	D	F	F	V	F	P	A	I	N	P	Q	Y	G	T	D	Y	M	D	A	P	T	D	G	F	I	L	P	K	K	G	K	N	A	A	A	A	K	K	V	L	Q	Y	I	G	T	A	E	A	E	A	A	F	L	K	T	D	H	W	D	V	G	L	A	N	G
Template Known Secondary structure								S		T	T	T	G	G	G								B			T	T	T	T	T													B	T	T		S													T	S									T	T			S	S					T	T
Template Predicted Secondary structure
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions