Job Description P0AG78 Confidence 80.59% Date Wed Jan 25 15:20:33 GMT 2012 Rank 113 Aligned Residues 232 % Identity 13% Template c3o66A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:glycine betaine/carnitine/choline abc transporter; PDBTitle: crystal structure of glycine betaine/carnitine/choline abc transporter Resolution 1.86 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	A	K	D	I	Q	L	L	N	V	S	Y	D	P	T	R	E	L	Y	E	Q	Y	N	K	A	F	S	A	H	W	K	Q	Q	T	G	D	N	V	V	I	R	Q	S	H	G	G	S	G	K	Q	A	T	S	V	I	N	G	I	E	A	D	V	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.	.																											.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.																											.
Template Sequence		T	K	N	D	V	K	I	T	A	L	S	T	S	E	S	Q	I	I	S	H	X	L	R	L	L	I	E	H	D	T	.	.	H	G	K	I	K	P	T	L	V	N	N	L	G	S	S	T	I	Q	H	N	A	L	I	N	G	D	.	A	N	I	S	G	V	R	Y	N	G	T	D	L	T	G	A	L	K	E	A	P
Template Known Secondary structure												S	S																		T	.	.	T	T	S										S	S											T	S	.		S													T	T	T
Template Predicted Secondary structure																																.	.																											.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60			.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.		.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	L	A	Y	D	V	D	A	I	A	E	R	G	R	I	D	K	E	W	I	K	R	L	P	D	N	S	A	P	Y	T	S	T	I	V	F	L	V	R	K	G	N	P	K	Q	I	H	D	W	N	D	L	I	K	P	G	V	S	V	I	T	P	N	P	K	S	S	G	G	A	R	W	N	Y	L	A	A	W	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	K	D	P	K	K	A	X	I	A	T	Q	Q	G	F	K	K	K	F	D	Q	T	F	F	D	S	Y	G	F	A	N	T	Y	A	F	X	V	T	K	E	T	A	K	K	Y	H	L	E	T	V	S	D	L	A	K	H	S	K	D	L	R	L	G	X	D	S	S	W	X	N	G	D	G	Y	E	G	F	K	K	E
Template Known Secondary structure				S																	S								S		B																T		S	B	S	G	G	G	T	T	T	G	G	G							G	G	G					S
Template Predicted Secondary structure
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	A	L	H	H	N	N	N	D	Q	A	K	A	Q	D	F	V	R	A	L	Y	K	N	V	E	V	L	D	S	G	A	R	G	S	T	N	T	F	V	E	R	G	I	G	D	V	L	I	A	W	E	N	E	A	L	L	A	A	N	E	L	G	K	D	K	F	E	I	V	T	P	S	E	S	I	L	A	E	P	T
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.
Template Sequence		Y	G	F	D	F	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	R	P	X	Q	I	G	L	V	Y	D	A	L	N	T	E	K	L	D	V	A	L	G	Y	S	T	D	G	R	I	A	A	Y	.	.	.	.	.	D	L	K	V	L	K	D	D	K	Q	F	F	P	P	Y	A
Template Known Secondary structure							S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						G	G	G							T	T	S		S						T	T							T	.	.	.	.	.	T					B		T	T			S				B
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.
Template SS confidence
		190	.	.	.	.	.	.																				.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.						230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.			.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		V	S	V	V	D	K	V	V	E	K	K	G	T	K	E	V	A	E	A	Y	L	K	Y	.	.	L	Y	S	P	E	G	Q	E	I	A	A	K
Query Conservation																									.	.
Alig confidence																									.	.
Template Conservation
Template Sequence		A	S	A	V	A	T	N	E	L	L	R	Q	H	P	E	L	K	T	T	I	N	K	L	T	G	K	I	S	T	S	E	X	Q	R	L	N	Y
Template Known Secondary structure															T								T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions