Job Description P0AG78 Confidence 98.14% Date Wed Jan 25 15:20:33 GMT 2012 Rank 87 Aligned Residues 235 % Identity 12% Template c3k2dA_ PDB info PDB header:immune system Chain: A: PDB Molecule:abc-type metal ion transport system, periplasmic component; PDBTitle: crystal structure of immunogenic lipoprotein a from vibrio vulnificus Resolution 2.60 Å

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		17	.	.	20	.	.	.	.	.	.		.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		V	M	A	K	D	I	Q	L	L	N	.	V	S	Y	D	P	T	R	E	L	Y	E	Q	Y	N	K	A	F	S	A	H	W	K	Q	Q	T	G	D	N	V	V	I	R	Q	S	H	G	G	S	G	K	Q	A	T	S	V	I	N	G	I	E	A	D	V	V	T	L	A	L	A	Y	D	V	D	A	I	A	E	R	G
Query Conservation												.
Alig confidence												.																						.	.	.	.														.											.
Template Conservation																																		.	.	.	.														.											.
Template Sequence		G	H	M	D	T	S	K	V	K	V	G	V	M	A	G	A	E	A	Q	V	A	E	V	A	A	K	V	A	K	E	K	Y	.	.	.	.	G	L	D	V	E	L	V	T	F	T	D	Y	V	.	T	P	N	A	A	L	D	D	G	S	.	I	D	M	N	A	F	Q	H	K	P	Y	L	D	R	Q	V	E	D	R
Template Known Secondary structure				S											T	T																		.	.	.	.										S		T	T	.	S								T	S	.		S
Template Predicted Secondary structure																																		.	.	.	.														.											.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.					.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80		.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	D	K	E	W	I	K	R	L	P	D	N	S	A	P	Y	T	S	T	I	V	F	L	V	R	K	G	N	P	K	Q	I	H	D	W	N	D	L	I	K	P	G	V	S	V	I	T	P	N	P	K	S	S	G	G	A	R	W	N	Y	L	A	A	W	G	Y	A	L	H	H	N	N	N	D	Q	A	K	A	Q
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Template Sequence		D	Y	K	.	.	.	.	.	.	.	.	.	.	.	L	T	I	A	G	N	T	F	V	Y	P	I	A	G	Y	S	K	Q	V	K	S	V	A	A	L	.	.	.	.	A	D	G	V	R	I	A	V	P	N	D	P	T	N	L	G	R	S	L	L	L	L	E	Q	Q	G	L	I	K	L	R	P	E	V	G	L	L
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.																	S	S		S		S	T	T		.	.	.	.		T	T								S														T	T	S					T	T			S	S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.
Template SS confidence
		100	.	.												.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.					.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	V	R	A	L	Y	K	N	V	E	V	L	D	S	G	A	R	G	S	T	N	T	F	V	E	R	G	I	G	D	V	L	I	A	W	E	N	E	A	L	L	A	A	N	E	L	G	K	D	K	F	E	I	V	T	P	S	E	S	I	L	A	E	P	T	V	S	V	V	D	K	V	V	E	K	K	G	T	K
Query Conservation
Alig confidence																																																								.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.
Template Sequence		A	T	V	R	D	I	V	E	N	P	K	N	I	T	I	M	E	L	D	A	A	Q	L	P	R	S	L	D	D	V	A	L	S	I	I	N	T	T	Y	A	S	S	I	N	L	T	P	E	K	D	G	V	F	V	.	.	.	.	.	.	E	D	K	E	S	P	Y	V	N	L	I	V	A	R	Q	D	N	V	Q	N
Template Known Secondary structure				G	G	G					T	T									G	G	G					T	T	T	S	S										G	G	G	T								S			.	.	.	.	.	.			S	S	S	S									T	T	T	T	T	S
Template Predicted Secondary structure																																																								.	.	.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.							.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	A	E	A	Y	L	K	Y	L	Y	S	P	E	G	Q	E	I	A	A	K	N	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	N	V	Q	N	F	V	K	A	Y	Q	T	E	E	V	Y	T	A	A	K	E	I	F
Template Known Secondary structure												T	S											T
Template Predicted Secondary structure
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions