Job Description P0AG78 Confidence 98.19% Date Wed Jan 25 15:20:33 GMT 2012 Rank 84 Aligned Residues 229 % Identity 10% Template c3ir1F_ PDB info PDB header:protein binding Chain: F: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of lipoprotein gna1946 from neisseria2 meningitidis Resolution 2.15 Å

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		22	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		I	Q	L	L	N	V	S	Y	D	P	T	.	R	E	L	Y	E	Q	Y	N	K	A	F	S	A	H	W	K	Q	Q	T	G	D	N	V	V	I	R	Q	S	H	G	G	S	G	K	Q	A	T	S	V	I	N	G	I	E	A	D	V	V	T	L	A	L	A	Y	D	V	D	A	I	A	E	R	G	R	I	D	K	E
Query Conservation													.
Alig confidence													.														.	.	.	.										.																	.																							.	.
Template Conservation																											.	.	.	.										.																	.																							.	.
Template Sequence		K	E	I	V	F	G	T	T	V	G	D	F	G	D	M	V	K	E	Q	I	Q	P	E	L	E	.	.	.	.	K	K	G	Y	T	V	K	L	V	.	E	F	T	D	Y	V	R	P	N	L	A	L	A	E	G	E	.	L	D	I	N	V	F	Q	H	K	P	Y	L	D	D	F	K	K	E	H	N	L	D	.	.
Template Known Secondary structure										S	S									T							.	.	.	.	T	T	T							.			S	S	S	S									T	S	.		S																					.	.
Template Predicted Secondary structure																											.	.	.	.										.																	.																							.	.
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.					.	.	70	.	.	.	.	.	.		.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		W	I	K	R	L	P	D	N	S	A	P	Y	T	S	T	I	V	F	L	V	R	K	G	N	P	K	Q	I	H	D	W	N	D	L	I	K	P	G	V	S	V	I	T	P	N	P	K	S	S	G	G	A	R	W	N	Y	L	A	A	W	G	Y	A	L	H	H	N	N	N	D	Q	A	K	A	Q	D	F	V	R	A
Query Conservation
Alig confidence		.	.	.	.																		.	.	.	.	.											.	.	.
Template Conservation		.	.	.	.																		.	.	.	.	.											.	.	.
Template Sequence		.	.	.	.	I	T	E	V	F	Q	V	P	T	A	P	L	G	L	Y	P	G	.	.	.	.	.	K	L	K	S	L	E	E	V	K	D	.	.	.	G	S	T	V	S	A	P	N	D	P	S	N	F	A	R	V	L	V	M	L	D	E	L	G	W	I	K	L	K	D	G	I	N	P	L	T	A	S	K	A	D
Template Known Secondary structure		.	.	.	.									B								S	.	.	.	.	.	S	S		S	T	T	S			T	.	.	.	T								S														T	T	S	S				T	T	S		G	G	G			G	G	G
Template Predicted Secondary structure		.	.	.	.																		.	.	.	.	.											.	.	.
Template SS confidence
						115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.						.	.	.	.	.	.	.	.	140	.				.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	K	N	V	E	V	L	D	S	G	A	R	G	S	T	N	T	F	V	E	R	G	I	G	D	V	L	I	A	W	E	N	E	A	L	L	A	A	N	E	L	G	K	D	K	F	E	I	V	T	P	S	E	S	I	L	A	E	P	T	V	S	V	V	D	K	V	V	E	K	K	G	T	K	E	V	A	E	A
Query Conservation
Alig confidence																																																			.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.
Template Sequence		I	A	E	N	L	K	N	I	K	I	V	E	L	E	A	A	Q	L	P	R	S	R	A	D	V	D	F	A	V	V	N	G	N	Y	A	I	S	S	G	M	K	L	T	E	A	L	F	Q	E	.	.	.	.	.	.	.	.	P	S	F	A	Y	V	N	W	S	A	V	K	T	A	D	K	D	S	Q	W	L	K	D
Template Known Secondary structure						T	T									G	G	G					G	G	G	S	S												T	T			G	G	G		S				.	.	.	.	.	.	.	.			S	T	T								G	G	G	T	T
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.									.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	K	Y	L	Y	S	P	E	G	Q	E	I	A	A	K	N	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	T	E	A	Y	N	S	D	A	F	K	A	Y	A	H	K	R	F
Template Known Secondary structure						T	S	S											S
Template Predicted Secondary structure
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions