Job Description P0AG78 Confidence 95.39% Date Wed Jan 25 15:20:33 GMT 2012 Rank 101 Aligned Residues 198 % Identity 9% Template c3hn0A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein; PDBTitle: crystal structure of an abc transporter (bdi_1369) from2 parabacteroides distasonis at 1.75 a resolution Resolution 1.75 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	Q	L	L	N	V	S	Y	D	P	T	R	E	L	Y	E	Q	Y	N	K	A	F	S	A	H	W	K	Q	Q	T	G	D	N	V	V	I	R	Q	S	H	G	G	S	G	K	Q	A	T	S	V	I	N	G	I	E	A	D	V	V	T	L	A	L	A	Y	D	V	D	A	I	A	E	R	G	R	I	D	K	E
Query Conservation
Alig confidence																		.	.													.								.																	.													.								.	.	.	.
Template Conservation																		.	.													.								.																	.													.								.	.	.	.
Template Sequence		D	T	V	I	K	V	S	V	L	R	G	P	S	V	I	A	.	.	F	A	D	W	L	E	N	P	P	I	I	D	.	N	K	K	V	Q	V	K	.	V	V	D	S	P	D	L	A	Q	A	L	L	I	K	Q	E	.	T	D	I	A	V	L	P	X	I	N	A	A	.	N	L	Y	N	K	G	I	.	.	.	.
Template Known Secondary structure											S	S	T					.	.	T						S					T	.	T							.			S											T	T		.		S											.					T	T		.	.	.	.
Template Predicted Secondary structure																		.	.													.								.																	.													.								.	.	.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.			.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.		.	.	.	.	90	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		W	I	K	R	L	P	D	N	S	A	P	Y	T	S	T	I	V	F	L	V	R	K	G	N	P	K	Q	I	H	D	W	N	D	L	I	K	P	G	V	S	V	I	T	P	N	P	K	S	S	G	G	A	R	W	N	Y	L	A	A	W	G	Y	A	L	H	H	N	N	N	D	Q	A	K	A	Q	D	F	V	R	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	K	I	K	L	A	G	C	P	I	W	G	T	L	Y	L	V	E	K	T	P	L	K	E	P	A	.	.	.	.	L	Y	V	F	G	N	G	T	T	P	D	I	L	T	R	Y	Y	L	G	R	Q	R	L	D	Y	P	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	S																		S	S			S			.	.	.	.				S	S	T	T	S														T					.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
															93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.					.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	K	N	V	E	V	L	D	S	G	A	R	G	S	T	N	T	F	V	E	R	G	I	G	D	V	L	I	A	W	E	N	E	A	L	L	A	A	N	E	L	G	K	D	K	F	E	I	V	T	P	S	E	S	I	L	A	E	P	T	V	S	V	V	D	K	V	V	E	K	K	G	T	K	E	V	A	E	A
Query Conservation
Alig confidence		.	.	.	.	.																																																																			.
Template Conservation		.	.	.	.	.																																																																			.
Template Sequence		.	.	.	.	.	L	N	Y	A	F	N	T	A	G	E	I	T	Q	G	I	L	A	G	K	V	N	R	A	V	L	G	E	P	F	L	S	I	A	L	R	K	D	S	S	L	R	I	T	A	D	L	N	H	L	T	D	N	D	T	L	G	F	A	Q	T	A	V	V	Y	T	P	.	T	X	E	K	Y	R	I	A
Template Known Secondary structure		.	.	.	.	.				S			S											T	S		S						T	T										T	T										S	S	T	T		S	S											G	.	G	G	G	G	G
Template Predicted Secondary structure		.	.	.	.	.																																																																			.
Template SS confidence
							144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.
		261	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	E	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		218	.	220

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions