Job Description P0AG78 Confidence 99.96% Date Wed Jan 25 15:20:33 GMT 2012 Rank 5 Aligned Residues 230 % Identity 19% Template c3fj7A_ PDB info PDB header:protein binding Chain: A: PDB Molecule:major antigenic peptide peb3; PDBTitle: crystal structure of l-phospholactate bound peb3 Resolution 1.70 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	L	N	V	S	Y	D	P	T	R	E	L	Y	E	Q	Y	N	K	A	F	S	A	H	W	K	Q	Q	T	G	D	N	V	V	I	R	Q	S	H	G	G	S	G	K	Q	A	T	S	V	I	N	G	I	E	A	D	V	V	T	L	A	L	A	Y	D	V	D	A	I	A	E	R	G	R	I	D	K	E	W	I
Query Conservation
Alig confidence																											.	.	.	.	.	.																							.	.																								.	.
Template Conservation																											.	.	.	.	.	.																							.	.																								.	.
Template Sequence		D	V	N	L	Y	G	P	G	G	P	H	T	A	L	K	D	I	A	N	K	Y	S	E	K	T	.	.	.	.	.	.	G	V	K	V	N	V	N	F	G	P	Q	A	T	W	F	E	K	A	K	K	D	A	.	.	D	I	L	F	G	A	S	D	Q	S	A	L	A	I	A	S	D	F	G	K	D	F	N	.	.
Template Known Secondary structure									T	T	T																.	.	.	.	.	.									S		G	G	G	T									.	.	S					S	S										T	T	G	G	G	S		.	.
Template Predicted Secondary structure																											.	.	.	.	.	.																							.	.																								.	.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.							.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.			.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	L	P	D	N	S	A	P	Y	T	S	T	I	V	F	L	V	R	K	G	N	P	K	Q	I	H	D	W	N	D	L	I	K	P	G	V	S	V	I	T	P	N	P	K	S	S	G	G	A	R	W	N	Y	L	A	A	W	G	Y	A	L	H	H	N	N	N	D	Q	A	K	A	Q	D	F	V	R	A	L	Y
Query Conservation
Alig confidence		.	.																																																												.	.	.	.	.	.	.
Template Conservation		.	.																																																												.	.	.	.	.	.	.
Template Sequence		.	.	V	S	K	I	K	P	L	Y	F	R	E	A	I	I	L	T	Q	K	G	N	P	L	K	I	K	G	L	K	D	L	A	N	K	K	V	R	I	V	V	P	E	G	A	G	K	S	N	T	S	G	T	G	V	W	E	D	M	I	G	.	.	.	.	.	.	.	R	T	Q	D	I	K	T	I	Q	N	F	R
Template Known Secondary structure		.	.	G	G	G														S	T	T		T	T				S							S										T	T	S	S			T	T	T	T							G	.	.	.	.	.	.	.	G	G
Template Predicted Secondary structure		.	.																																																												.	.	.	.	.	.	.
Template SS confidence
				91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.								150	.	.	.	.	.	.	.	.	.	160	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N	V	E	V	L	D	S	G	A	R	G	S	T	N	T	F	V	E	R	G	I	G	D	V	L	I	A	W	E	N	E	A	L	L	A	A	N	E	L	G	K	D	K	F	E	I	V	T	P	S	E	S	I	L	A	E	P	T	V	S	V	V	D	K	V	V	E	K	K	G	T	K	E	V	A	E	A	Y	L
Query Conservation
Alig confidence											.																															.	.	.	.	.	.										.	.	.
Template Conservation											.																															.	.	.	.	.	.										.	.	.
Template Sequence		N	N	I	V	A	F	V	P	N	.	S	G	S	A	R	K	L	F	A	Q	D	Q	A	D	A	W	I	T	W	I	D	W	S	K	S	N	P	D	I	G	.	.	.	.	.	.	T	A	V	A	I	E	K	D	L	.	.	.	V	V	Y	R	T	F	N	V	I	A	K	E	G	A	S	K	E	T	Q	D	F	I
Template Known Secondary structure			T						S	S	.										T	T			S													T	T	S		.	.	.	.	.	.							T	T	T	.	.	.												T	T
Template Predicted Secondary structure											.																															.	.	.	.	.	.										.	.	.
Template SS confidence
		162	.	.	.	.	.	.	.	170		.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200							.	.	.	.	.	.	.	.	.				210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Y	L	Y	S	P	E	G	Q	E	I	A	A	K	N	Y	Y	R	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	Y	L	S	S	K	E	A	K	E	I	F	K	K	Y	G	W	R	E
Template Known Secondary structure				T	T	S										T	T		B
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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