Job Description P0AG78 Confidence 97.18% Date Wed Jan 25 15:20:33 GMT 2012 Rank 95 Aligned Residues 269 % Identity 12% Template c3e4rA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein; PDBTitle: crystal structure of the alkanesulfonate binding protein2 (ssua) from the phytopathogenic bacteria xanthomonas3 axonopodis pv. citri bound to hepes Resolution 2.01 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	K	D	I	Q	L	L	N	V	S	Y	D	P	T	R	E	L	Y	E	Q	Y	N	K	A	F	S	A	H	W	K	Q	Q	T	G	D	N	V	V	I	R	Q	S	H	G	G	S	G	K	Q	A	T	S	V	I	N	G	I	E	A	D	V	V	T	L	A	L	A	Y	D	V	D	A	I	A	E	R	G	R	I
Query Conservation
Alig confidence																																.	.	.	.
Template Conservation																																.	.	.	.
Template Sequence		A	A	E	P	A	Q	L	R	I	G	Y	Q	K	A	V	S	S	L	V	L	A	K	Q	H	R	L	L	E	Q	R	.	.	.	.	F	P	R	T	K	I	T	W	V	E	F	P	A	G	P	Q	L	L	E	A	L	N	V	G	S	I	D	L	G	G	A	G	D	I	P	P	L	F	A	Q	A	A	G	A	D	L
Template Known Secondary structure						S								T	T										T	T						.	.	.	.		T	T	S								S	S										T	T	S		S						S									T	T
Template Predicted Secondary structure																																.	.	.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.					.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	E	W	I	K	R	L	P	D	N	S	A	P	Y	T	S	T	I	V	F	L	V	R	K	G	N	P	K	Q	I	H	D	W	N	D	L	I	K	P	G	V	S	V	I	T	P	N	P	K	S	S	G	G	A	R	W	N	Y	L	A	A	W	G	Y	A	L	H	H	N	N	N	D	Q	A	K	A	Q	D	F
Query Conservation
Alig confidence			.	.	.	.	.	.																				.	.										.	.	.	.																															.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.																				.	.										.	.	.	.																															.	.	.	.	.	.	.	.	.
Template Sequence		L	.	.	.	.	.	.	Y	V	G	W	V	P	P	T	P	K	A	E	T	I	L	V	P	S	K	.	.	S	A	L	R	T	V	A	D	L	.	.	.	.	K	G	K	R	I	A	F	Q	K	G	S	S	A	H	N	L	L	L	R	V	L	A	K	S	G	L	S	M	R	D	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			.	.	.	.	.	.									G	G	G							T	T	.	.					S	G	G	G	G	.	.	.	.	T	T							T	T	S													T	T			G	G	G	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure			.	.	.	.	.	.																				.	.										.	.	.	.																															.	.	.	.	.	.	.	.	.
Template SS confidence
		101							.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120			.	.	.	.	.	.	.	.	.					130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	A	L	Y	K	N	V	E	V	L	D	S	G	A	R	G	S	T	N	T	F	V	E	R	G	I	G	D	V	L	I	A	W	E	N	E	A	L	L	A	A	N	E	L	G	K	D	K	F	E	I	V	T	P	S	E	S	I	L	A	E	P	T	V	S	V	V	D	K	V	V	E	K	K	G	T	K	E	V
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																																							.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																																							.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	I	T	P	L	Y	L	S	P	A	N	A	R	A	A	F	A	A	G	Q	V	D	A	W	A	I	W	D	P	W	Y	S	A	L	T	L	D	G	S	.	.	.	.	A	R	L	L	A	N	G	E	G	L	G	L	T	G	G	F	F	L	S	S	R	R	Y	A	T	A	W	G	P	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	S																T	T			S						T	T								T	T	S	.	.	.	.							S	T	T	S																	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																							.	.	.	.
Template SS confidence
										160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.					.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		258	.	260	.	.	.	.	.										.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.
Query Sequence		A	E	A	Y	L	K	Y	L	.	.	.	.	.	.	.	.	.	Y	S	P	E	G	Q	E	I	A	A	K	N	Y	Y	R	P	R	D	A	E	V	A	K	K	Y	E	N	A	F	P	K	L	K	L	F	T	I	D	E	E	F	G	G	W	T	K	A	Q	K	E	H	F	A	N	G	G	T	F	D	Q
Query Conservation										.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.														.	.
Template Conservation																																.	.
Template Sequence		V	Q	Q	V	M	G	T	L	N	Q	A	D	G	L	L	E	R	D	R	A	G	S	I	K	T	L	A	Q	V	S	.	.	G	L	P	P	A	V	V	E	R	T	L	A	H	R	P	P	A	S	V	Q	P	L	S	A	Q	V	I	K	A	Q	Q	A	T	A	D	L	F	Y	A	Q	R	L	L	P	K
Template Known Secondary structure														T					T													.	.													T							B																				T	T		S	S	S
Template Predicted Secondary structure																																.	.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.			.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions