Job Description P0AG78 Confidence 99.93% Date Wed Jan 25 15:20:33 GMT 2012 Rank 16 Aligned Residues 275 % Identity 16% Template c3cg3A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein ph0151; PDBTitle: crystal structure of p. horikoshii periplasmic binding2 protein moda/wtpa with bound tungstate Resolution 1.80 Å

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		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.		.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence		A	K	D	I	Q	L	L	N	V	S	Y	D	P	T	R	E	L	Y	E	Q	Y	N	K	A	F	S	A	H	W	K	Q	Q	T	G	D	N	V	V	I	R	Q	S	H	G	G	S	G	K	Q	A	T	S	V	I	N	G	I	E	A	.	D	V	V	T	L	A	L	A	Y	D	V	D	A	I	A	E	R	G	R	I
Query Conservation																																																													.
Alig confidence																																																													.
Template Conservation
Template Sequence		S	R	E	A	R	L	I	I	F	H	A	G	S	L	S	I	P	L	S	Q	V	E	E	K	F	T	K	Y	A	Q	E	K	L	G	V	K	V	T	F	Q	D	E	A	S	G	S	V	K	A	V	R	K	V	T	D	L	K	K	R	A	D	I	V	A	V	A	D	Y	T	L	I	P	Q	L	M	I	P	N	Y	T
Template Known Secondary structure													G	G	G																																									T	S					S					S	S	T	T						T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.								.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure																														.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.
Query Sequence		D	K	E	W	I	K	R	L	P	D	N	S	A	P	Y	T	S	T	I	V	F	L	V	R	K	G	N	P	.	.	.	.	.	.	.	K	Q	I	H	D	W	N	D	L	I	K	P	G	V	S	V	I	T	P	N	P	K	S	S	G	G	A	R	W	N	Y	L	A	A	W	G	Y	A	L	H	H	N	N	N	D
Query Conservation																														.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.
Template Sequence		D	F	Y	.	.	.	.	.	.	.	.	V	L	F	A	T	N	E	I	V	I	A	F	T	N	K	S	K	Y	A	D	E	M	L	K	N	P	D	K	W	Y	E	I	L	S	R	P	D	V	S	F	G	F	S	D	P	N	Q	D	P	C	G	Y	R	S	V	M	V	M	K	L	A	E	L	Y	Y	G	R	P	I
Template Known Secondary structure		S			.	.	.	.	.	.	.	.														T	T	S	T	T								G	G	G					T	T		T	T								T	T	T																				S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.
Template SS confidence
		105	.	.									.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		171	.	.	.	.	.	.	.															.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.																		.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	A	K	A	Q	D	F	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	A	L	Y	K	N	V	E	V	L	D	S	G	A	R	G	S	T	N	T	F	V	E	R	G	I	G	D	V	L	I	A	W	E	N	E	A	L	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	K	E	L	V	E	K	T	T	N	I	Y	S	N	G	T	R	I	Y	A	P	K	E	I	I	I	K	D	K	R	V	I	M	R	P	K	E	T	D	L	V	G	L	V	E	S	G	S	L	D	Y	I	F	I	Y	K	S	V	A	K	Q	H	H	L	S	Y	I	T	L	P	D	D	I	N	L	G	D	F	N	K
Template Known Secondary structure						T	T	T	T	B	S					T	T						S	S			B	S	S	T	T					S	S	T									T	T	S	S													T	T								T	T	T	S	S			G	G	G
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.		.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		N	E	L	G	K	D	K	F	E	I	V	T	P	S	E	S	I	L	A	E	P	T	V	S	V	V	D	K	V	V	E	K	K	G	T	K	E	V	A	E	A	Y	L	K	Y	L	Y	S	P	E	G	Q	E	I	A	A	K	N	Y	Y	R	P	R	D	A	E	V	A	.	K	K	Y	E	N	A	F	P	K	L	K
Query Conservation																																																																						.
Alig confidence																																																																						.
Template Conservation
Template Sequence		A	D	F	Y	G	R	V	S	I	T	L	G	S	T	G	K	T	I	K	A	K	P	I	V	Y	G	I	T	V	L	K	N	A	P	N	R	E	L	A	I	E	F	L	R	F	L	L	G	N	E	G	R	K	I	F	E	D	N	Y	Q	E	F	L	S	P	P	V	A	F	G	N	V	P	P	E	I	R	R	L	V
Template Known Secondary structure						T	T						T	T	T																	T	T		T	T													S										T	T												S			G	G	G	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		299	300	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	V	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		337	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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