Job Description P0AG78 Confidence 99.68% Date Wed Jan 25 15:20:33 GMT 2012 Rank 73 Aligned Residues 265 % Identity 11% Template c2z8fB_ PDB info PDB header:sugar binding protein Chain: B: PDB Molecule:galacto-n-biose/lacto-n-biose i transporter substrate- PDBTitle: the galacto-n-biose-/lacto-n-biose i-binding protein (gl-bp) of the2 abc transporter from bifidobacterium longum in complex with lacto-n-3 tetraose Resolution 1.65 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.				30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.					.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.																																				.	.	.	.
Query SS confidence																.	.	.																																				.	.	.	.
Query Sequence		S	V	M	A	K	D	I	Q	L	L	N	V	S	Y	.	.	.	D	P	T	R	E	L	Y	E	Q	Y	N	K	A	F	S	A	H	W	K	Q	Q	T	G	D	N	V	V	I	R	Q	S	H	G	G	S	.	.	.	.	G	K	Q	A	T	S	V	I	N	G	I	E	A	D	V	V	T	L	A	L	A	Y	D	V
Query Conservation																.	.	.																																				.	.	.	.
Alig confidence																.	.	.																			.	.	.															.	.	.	.																			.
Template Conservation																																					.	.	.																																					.
Template Sequence		T	D	D	G	G	V	V	N	I	T	Y	M	H	R	L	P	D	S	E	G	M	T	L	V	N	D	I	V	A	K	W	N	K	Q	H	.	.	.	P	D	I	Q	V	K	A	T	K	F	D	G	K	A	S	D	M	I	K	K	L	E	T	D	V	K	S	G	E	A	P	D	L	A	Q	V	.	G	Y	A	E	L
Template Known Secondary structure						S														T	T	S															.	.	.	T	T									S	S		G	G	G												T				S					.		T	T	T
Template Predicted Secondary structure																																					.	.	.																																					.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70				.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.																				.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.							.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Query Sequence		D	A	I	A	E	R	G	R	I	D	K	E	W	I	K	R	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	S	A	P	Y	T	S	T	I	V	F	L	V	R	K	G	N	.	.	.	.	.	.	P	K	Q	I	H	D	W	N	D	L	I	K	P	G	V	S	V	I	T
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.
Template Conservation
Template Sequence		P	E	V	F	T	K	G	L	L	Q	D	V	T	Q	Y	A	E	Q	Y	K	N	D	F	A	S	G	P	Y	S	L	V	Q	V	G	G	K	A	Y	G	L	P	Q	D	T	G	P	L	V	Y	F	Y	N	K	A	E	F	E	K	L	G	I	T	E	I	P	Q	T	A	D	E	F	I	A	A	A	K	T	A	A	A
Template Known Secondary structure							T	T		B											G	G	G	B							T	T			T	T											B													T	T			S				B
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.																	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Query Sequence		P	N	P	K	S	S	G	G	A	R	W	N	Y	L	A	A	W	G	Y	A	L	H	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	N	N	D	Q	A	K	A	Q	D	F	V	R	A	L	Y	K	N	V	E	V	.	L	D	S	G	A	R	G	S	T	N	T	F	V	E	R	G	I	G	D
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation
Template Sequence		A	G	K	Y	I	M	S	Y	Q	P	D	E	A	G	N	M	I	S	G	L	A	G	A	S	G	G	W	Y	K	V	K	G	D	S	W	V	V	N	T	E	T	D	G	S	K	A	T	A	D	F	Y	Q	Q	L	L	D	A	K	A	A	T	T	N	P	R	W	D	P	S	F	D	A	S	I	K	D	G	S	L	I
Template Known Secondary structure		T	T		B	S		B			G	G	G	T	T	T								T	T			S					T	T																								T	T		S	B				T	T	S									T	T		B
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.				.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.					.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.																				.	.	.	.
Query SS confidence																					.	.	.																				.	.	.	.
Query Sequence		V	L	I	A	W	E	N	E	A	L	L	A	A	N	E	L	G	K	D	.	.	.	K	F	E	I	V	T	P	S	E	S	I	L	A	E	P	T	V	S	V	.	.	.	.	V	D	K	V	V	E	K	K	G	T	K	E	V	A	E	A	Y	L	K	Y	L	Y	S	P	E	G	Q	E	I	A	A	K	N	Y	Y
Query Conservation																					.	.	.																				.	.	.	.
Alig confidence																					.	.	.																				.	.	.	.																												.	.
Template Conservation																																																																										.	.
Template Sequence		G	T	V	A	A	A	W	E	A	P	L	F	M	T	S	S	G	G	T	G	S	G	E	W	Q	V	A	Q	L	G	D	W	F	G	N	A	G	K	T	G	P	D	G	G	S	A	V	A	V	L	K	N	S	K	H	P	K	E	A	M	E	F	L	D	W	F	N	T	Q	V	P	D	.	.	L	V	S	Q	G	L
Template Known Secondary structure							G	G	G								T	T	T	T	T	T	T	T								B		S	S		T	T		B		B									B	T	T		S														T					.	.				T	T
Template Predicted Secondary structure																																																																										.	.
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.			.	.	.	.	.	.
		280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	P	R	D	A	E	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	P	A	A	T	T	E
Template Known Secondary structure				S	B		S	S
Template Predicted Secondary structure
Template SS confidence
		350	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions