Job Description P0AG78 Confidence 99.70% Date Wed Jan 25 15:20:33 GMT 2012 Rank 71 Aligned Residues 304 % Identity 12% Template c2uvgA_ PDB info PDB header:sugar-binding protein Chain: A: PDB Molecule:abc type periplasmic sugar-binding protein; PDBTitle: structure of a periplasmic oligogalacturonide binding2 protein from yersinia enterocolitica Resolution 2.2 Å

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		22	.	.	.	.	.	.	.	30	.	.			.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.			.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure													.	.																																	.	.
Query SS confidence													.	.																																	.	.
Query Sequence		I	Q	L	L	N	V	S	Y	D	P	T	.	.	R	E	L	Y	E	Q	Y	N	K	A	F	S	A	H	W	K	Q	Q	T	G	D	N	V	V	I	R	Q	S	H	G	G	S	.	.	G	K	Q	A	T	S	V	I	N	G	I	E	A	D	V	V	T	L	A	L	A	Y	D	V	D	A	I	A	E	R	G	R	I
Query Conservation													.	.																																	.	.
Alig confidence													.	.																.	.	.															.	.																			.
Template Conservation																														.	.	.																																			.
Template Sequence		V	N	L	R	M	S	W	W	G	G	N	G	R	H	E	V	T	L	K	A	L	E	E	F	H	K	E	H	.	.	.	P	N	I	N	V	K	A	E	Y	T	G	W	D	G	H	L	S	R	L	T	T	Q	I	A	G	G	T	E	P	D	V	M	Q	T	.	N	W	N	W	L	P	I	F	S	K	D	G	T	G
Template Known Secondary structure																														.	.	.	T	T										S	T	T											T	T				S					.		T	T							T	T	S		S
Template Predicted Secondary structure																														.	.	.																																			.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.				.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.
		98	.	100	.	.	.	.	.	.																						.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.						.	.	.	.	.	.	130	.	.	.	.	.	.								.	.	.	140	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.														.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.														.	.	.	.	.	.	.
Query Sequence		D	K	E	W	I	K	R	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	S	A	P	Y	T	S	T	I	V	F	L	V	R	K	G	.	.	.	.	.	N	P	K	Q	I	H	D	W	N	D	L	I	K	.	.	.	.	.	.	.	P	G	V	S	V	I	T	P
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.														.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.														.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	Y	N	L	F	S	V	K	E	Q	L	D	L	A	Q	F	D	P	K	E	L	Q	Q	T	T	V	N	G	K	L	N	G	I	P	I	S	V	T	A	R	I	F	Y	F	N	D	A	T	W	A	K	A	G	L	E	Y	P	K	T	W	D	E	L	L	A	A	G	Q	V	F	K	E	K	L	G	D	Q	Y	Y	P
Template Known Secondary structure		B			G	G	G	G	T	T	T	S		G	G	G	S								T			T	T																									T					S	S															T		T	T		B	S
Template Predicted Secondary structure
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		145	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.													.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.							.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.
Query Sequence		N	P	K	S	S	G	G	A	R	W	N	Y	L	A	A	W	G	Y	A	L	H	H	.	.	.	.	.	.	.	.	.	.	.	.	N	N	N	D	Q	A	K	A	Q	D	F	V	R	A	L	Y	K	N	V	E	V	.	.	.	.	.	.	L	D	S	G	A	R	G	S	T	N	T	F	V	E	R	G	I	G	D
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.
Template Conservation
Template Sequence		V	V	L	E	H	Q	D	T	L	A	L	I	R	S	Y	M	T	Q	K	Y	N	I	P	T	I	D	E	A	N	K	K	F	A	Y	S	P	E	Q	W	V	E	F	F	T	M	Y	K	T	M	V	D	N	H	V	M	P	S	T	K	Y	Y	A	S	F	G	K	S	N	M	Y	E	M	K	P	W	N	G	E	W	A
Template Known Secondary structure			B																						S			T	T	T	T																						T	T	S	S								T	T		S	S		G	G	G	S	T	T				S	B
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.							.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure																												.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.
Query Sequence		V	L	I	A	W	E	N	E	A	L	L	A	A	N	E	L	G	K	D	K	F	E	I	V	T	P	.	.	.	.	.	.	S	E	S	I	L	A	E	P	T	V	S	V	V	D	K	V	V	E	K	K	G	T	K	E	V	A	E	A	Y	L	K	Y	L	Y	S	P	E	G	Q	E	I	A	A	K	N	Y	Y	R
Query Conservation																												.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.
Template Conservation
Template Sequence		G	T	Y	M	W	N	S	T	I	T	K	Y	S	D	N	L	T	K	P	A	K	L	V	L	G	P	Y	P	M	L	P	G	A	K	D	A	G	L	F	F	K	P	A	Q	M	L	S	I	G	K	S	T	K	H	P	Q	E	S	A	M	L	I	N	F	L	L	N	S	K	E	G	V	E	L	G	L	E	R	G	V
Template Known Secondary structure							G	G	G							T	S		T	T												T	T		S															B	S			S															S							T	T	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
		281	.	.	.	.	.	.																							.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	R	D	A	E	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	K	Y	E	N	A	F	P	K	L	K	L	F	T	I	D	E	E	F	G	G	W	T	K	A	Q	K	E	H	F	A	N	G	G	T	F	D	Q	I	S	K	R
Query Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	L	S	A	T	A	V	T	Q	L	R	A	S	G	V	I	K	D	E	D	P	S	V	A	G	L	N	M	A	L	E	L	P	H	K	M	T	T	S	P	Y	F	D	D	P	Q	I	V	S	L	F	G	D	A	I	Q	Y	I	D	Y	G	Q	K	T	V	Q	E	T	A	E	Y
Template Known Secondary structure		B		S										T	T		S		S	S	S												S								G	G	G	G																	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions