Job Description P0AG78 Confidence 99.96% Date Wed Jan 25 15:20:33 GMT 2012 Rank 6 Aligned Residues 285 % Identity 15% Template c2qryD_ PDB info PDB header:transport protein Chain: D: PDB Molecule:thiamine-binding periplasmic protein; PDBTitle: periplasmic thiamin binding protein Resolution 2.25 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.				.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.				.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																.	.	.																																							.	.	.
Query SS confidence																.	.	.																																							.	.	.
Query Sequence		D	I	Q	L	L	N	V	S	Y	D	P	T	R	E	.	.	.	L	Y	E	Q	Y	N	K	A	F	S	A	H	W	K	Q	Q	T	G	D	N	V	V	I	R	Q	S	H	G	G	S	G	K	Q	A	T	S	V	I	.	.	.	N	G	I	E	A	D	V	V	T	L	A	L	A	Y	D	V	D	A	I	A	E	R
Query Conservation																.	.	.																																							.	.	.
Alig confidence																.	.	.												.	.	.	.										.														.	.	.
Template Conservation																														.	.	.	.										.
Template Sequence		K	P	V	L	T	V	Y	T	Y	D	S	F	A	A	D	W	G	P	G	P	V	V	K	K	A	F	E	A	.	.	.	.	D	C	N	C	E	L	K	L	V	.	A	L	E	D	G	V	S	L	L	N	R	L	R	X	E	G	K	N	S	K	A	D	V	V	L	G	L	D	N	N	L	L	D	A	A	S	K	T
Template Known Secondary structure															S	T	T	S	S											.	.	.	.	S	S		S						.			S													G	G	G				S							G	G	G						T	T
Template Predicted Secondary structure																														.	.	.	.										.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.					.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.											.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.																			.
Query SS confidence														.	.	.	.	.	.	.	.	.	.																			.
Query Sequence		G	R	I	D	K	E	W	I	K	R	L	P	.	.	.	.	.	.	.	.	.	.	D	N	S	A	P	Y	T	S	T	I	V	F	L	V	R	K	G	N	.	P	K	Q	I	H	D	W	N	D	L	I	K	P	G	V	S	V	I	T	P	N	P	K	S	S	G	G	A	R	W	N	Y	L	A	A	W	G	Y	A
Query Conservation														.	.	.	.	.	.	.	.	.	.																			.
Alig confidence														.	.	.	.	.	.	.	.	.	.																			.
Template Conservation
Template Sequence		G	L	F	A	K	S	G	V	A	A	D	A	V	N	V	P	G	G	W	N	N	D	T	F	V	P	F	D	Y	G	Y	F	A	F	V	Y	D	K	N	K	L	K	N	P	P	Q	S	L	K	E	L	V	E	S	D	Q	N	W	R	V	I	Y	Q	D	P	R	T	S	T	P	G	L	G	L	L	L	W	X	Q	K
Template Known Secondary structure		T		B							T	T	S				T	T					S	S															T	T	T		S	S			S	S								S	S									T	T	T
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	H	N	N	N	D	Q	A	K	A	Q	D	F	V	R	A	L	Y	K	N	V	E	V	L	D	S	G	A	R	G	S	T	N	T	F	V	E	R	G	I	G	D	V	L	I	A	W	E	N	E	A	L	L	A	A	N	E	L	G	K	D	K	F	E	I	V	T	P	S	E	S	I	L	A	E	P	T	V	S
Query Conservation
Alig confidence				.	.	.	.	.																						.																																															.	.	.
Template Conservation				.	.	.	.	.																						.																																															.	.	.
Template Sequence		V	Y	.	.	.	.	.	G	D	D	A	P	Q	A	W	Q	K	L	A	K	K	T	V	T	V	T	K	G	.	W	S	E	A	Y	G	L	F	L	K	G	E	S	D	L	V	L	S	Y	T	T	S	P	A	Y	H	I	L	E	E	K	K	D	N	Y	A	A	A	N	F	S	E	G	H	Y	L	.	.	.	Q	V
Template Known Secondary structure				.	.	.	.	.	G	G	G										T	T						S	S	.										T	T	S		S						T	T																				T	T					.	.	.
Template Predicted Secondary structure				.	.	.	.	.																						.																																															.	.	.
Template SS confidence
		174	.						.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.				.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.		.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300							.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																																				.																								.	.	.	.	.	.
Query SS confidence																																				.																								.	.	.	.	.	.
Query Sequence		V	V	D	K	V	V	E	K	K	G	T	K	E	V	A	E	A	Y	L	K	Y	L	Y	S	P	E	G	Q	E	I	A	A	K	N	.	Y	Y	R	P	R	D	A	E	V	A	K	K	Y	E	N	A	F	P	K	L	K	L	F	.	.	.	.	.	.	T	I	D	E	E	F	G	G	W	T	K	A	Q	K	E	H
Query Conservation																																				.																								.	.	.	.	.	.
Alig confidence																																				.																								.	.	.	.	.	.
Template Conservation
Template Sequence		E	V	A	A	R	T	A	A	S	K	Q	P	E	L	A	Q	K	F	L	Q	F	X	V	S	P	A	F	Q	N	A	I	P	T	G	N	W	X	Y	P	V	A	N	V	T	L	P	A	G	F	E	K	L	T	K	P	A	T	T	L	E	F	T	P	A	E	V	A	A	Q	R	Q	A	W	I	S	E	W	Q	R	A
Template Known Secondary structure							B	T	T		S													T	S					T	T					T		S			S	S						T	T	G	G	G	S				S	S
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		317	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	S	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		325	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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