Job Description P0AG78 Confidence 98.55% Date Wed Jan 25 15:20:33 GMT 2012 Rank 83 Aligned Residues 242 % Identity 11% Template c2qpqC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:protein bug27; PDBTitle: structure of bug27 from bordetella pertussis Resolution 1.92 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.			.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																																																															.	.
Query SS confidence																																																															.	.
Query Sequence		M	A	K	D	I	Q	L	L	N	V	S	Y	D	P	T	R	E	L	Y	E	Q	Y	N	K	A	F	S	A	H	W	K	Q	Q	T	G	D	N	V	V	I	R	Q	S	H	G	G	S	G	K	Q	A	T	S	V	I	N	G	I	E	A	D	.	.	V	V	T	L	A	L	A	Y	D	V	D	A	I	A	E	R	G
Query Conservation																																																															.	.
Alig confidence																	.	.																																													.	.
Template Conservation																	.	.
Template Sequence		P	N	K	P	L	D	I	I	V	T	F	P	P	G	G	.	.	G	T	D	M	L	A	R	L	I	G	N	Y	L	T	E	S	L	G	Q	T	A	V	V	E	N	R	P	G	A	S	G	N	V	G	A	R	L	V	A	D	R	A	P	D	G	Y	S	L	L	M	V	N	S	S	F	A	V	N	P	G	V	F	R
Template Known Secondary structure				S							S	S		T	T	S	.	.															T	T	S	S	S										G	G	G									T	S		S	S	S	S							T										S
Template Predicted Secondary structure																	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20			.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140					.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure																																															.	.	.	.
Query SS confidence																																															.	.	.	.
Query Sequence		R	I	D	K	E	W	I	K	R	L	P	D	N	S	A	P	Y	T	S	T	I	V	F	L	V	R	K	G	N	P	K	Q	I	H	D	W	N	D	L	I	K	P	G	V	S	.	.	.	.	V	I	T	P	N	P	K	S	S	G	G	A	R	W	N	Y	L	A	A	W	G	Y	A	L	H	H	N	N	N	D	Q
Query Conservation																																															.	.	.	.
Alig confidence																															.	.															.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.																																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	L	P	F	D	P	K	K	D	F	A	A	V	I	N	V	A	Y	V	P	S	V	F	V	V	P	A	G	S	.	.	K	Y	K	T	L	G	E	L	M	A	A	A	K	Q	T	N	T	Q	V	T	Y	G	S	C	G	N	G	T	P	Q	H	L	A	G	E	L	L	N	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S		S	S		T	T	T	S																		T	T		.	.	S			S								T		S	S	S								S	S	T	T	S											.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																															.	.																																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.			.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.														.	.	.		.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.				.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.	.				.
Query Sequence		A	K	A	Q	D	F	V	R	A	L	Y	K	N	V	E	V	L	D	S	G	A	R	G	S	T	N	T	F	V	E	R	G	I	G	D	V	L	I	A	W	E	N	E	A	L	L	A	A	N	E	L	G	K	D	K	F	E	I	V	T	P	S	.	.	.	.	.	.	.	.	.	.	.	.	.	E	S	I	.	L
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.				.
Alig confidence		.	.	.	.	.	.	.																																																								.	.	.	.	.	.	.	.	.	.	.	.	.				.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	V	S	A	K	T	H	M	V	H	V	P	Y	K	G	C	G	P	A	L	N	D	V	L	G	S	Q	I	G	L	A	V	V	T	A	S	S	A	I	P	F	I	K	A	G	K	L	Q	A	L	A	V	T	S	K	E	R	S	A	L	L	P	E	V	P	T	V	A	E	Q	G	V	A	G
Template Known Secondary structure		.	.	.	.	.	.	.				T									S	S										T	T	S	S	S															T	T	S							S	S	S	S			T	T		T	T	S		B	S	G	G	G	T		T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.				.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																							.	.	.
Query SS confidence																							.	.	.
Query Sequence		A	E	P	T	V	S	V	V	D	K	V	V	E	K	K	G	T	K	E	V	A	.	.	.	E	A	Y	L	K	Y	L	Y	S	P	E	G	Q	E	I	A	A	K	N	Y	Y	R	P
Query Conservation																							.	.	.
Alig confidence																							.	.	.
Template Conservation
Template Sequence		Y	E	L	N	Q	W	H	G	L	L	V	P	G	A	T	P	M	A	V	R	Q	K	L	Y	D	G	I	A	K	V	M	Q	R	D	D	V	Q	K	K	L	A	D	L	G	Y	S	T
Template Known Secondary structure														T	T	S																													T
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions