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Job DescriptionP0AG78
Confidence99.77%DateWed Jan 25 15:20:33 GMT 2012
Rank69Aligned Residues264
% Identity13%Templatec2i58B_
PDB info PDB header:sugar binding proteinChain: B: PDB Molecule:sugar abc transporter, sugar-binding protein; PDBTitle: crystal structure of rafe from streptococcus pneumoniae complexed with2 raffinose
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   20.........30.. .......40.........50.........60.........70.........80.. .......90.......
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Query Sequence  KDIQLLNVSYDPT. RELYEQYNKAFSAHWKQQTGDNVVIRQSHGGSGKQATSVINGIEADVVTL. ALAYDVDAIAERGRI
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Template Sequence  STVTIEYFNQKKEMTKTLEEITRDFEKENP. . . KIKVKVVNVPNAGEVLKTRVLAGDVPDVVNIYPQSIELQEWAKAGVF
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GGGTT
T...T

SSTT


S

TTSTT
B
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   4.....10.........20.........30... ......40.........50.........60.........70.........80
 
   98.100...... ...110.........120... ......130...... ...140........
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Query Sequence  DKEWIKRLP. . . . . . . . . . . . . . . . . DNSAPYTSTIVFLVRKG. . . . . NPKQIHDWNDLIK. . . . . . . PGVSVITPNPKS
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Template Conservation    
                    
     
                                   
              
Template Sequence  EDLSNKDYLKRVKNGYAEKYAVNEKVYNVPFTANAYGIYYNKDKFEELGLKVPETWDEFEQLVKDIVAKGQTPFGIAGAD
Template Known Secondary structure 


TT
SGGGGBGGGT
BTTB


BB

T




BTTT


B


TT
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   81........90.........100.........110.........120.........130.........140.........150.........160
 
   149150.........160....... ..170.........180.........190... ......200.......
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Query Sequence  SGGARWNYLAAWGYALHHN. . . . . . . . . . . . . . . . . . NNDQAKAQDFVRALYKNVEVLDSGAR. . . GSTNTFVERGIGDV
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Template Conservation                                              
     
                     
  
  
 
Template Sequence  AWTLNGYNQLAFATATGGGKEANQYLRYSQPNAIKLSDPIMKDDIKVMDILRINGSKQKNWEGAGYTDVIGAFARGDVLM
Template Known Secondary structure  GGGGTSSTSS
TT


TT
TTSSSTT
B
TTGGG

TSSS
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   161........170.........180.........190.........200.........210.........220.........230.........240
 
   208.210.........220.........230.........240..... ....250.........260.........270....... ..280..
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Query Sequence  LIAWENEALLAANELGKDKFEIVTPSESILAEPTVSVV. . . . DKVVEKKGTKEVAEAYLKYLYSPEGQEIAAKN. YYRPR
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Template Sequence  TPNGSWAITAINEQKPNFKIGTFMIPGKEKGQSLTVGAGDLAWSISATTKHPKEANAFVEYMTRPEVMQKYYDVDGSPTA
Template Known Secondary structure  GGGT

SS

B
BSSTT

B
BSSBSS
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TS


B
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   241........250.........260.........270.........280.........290.........300.........310.........320
 
   283...
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Query Sequence  DAEV
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Template Conservation      
Template Sequence  IEGV
Template Known Secondary structure  BTT
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   321...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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