Job Description P0AG78 Confidence 20.21% Date Wed Jan 25 15:20:33 GMT 2012 Rank 141 Aligned Residues 211 % Identity 9% Template c2h9bB_ PDB info PDB header:transcription Chain: B: PDB Molecule:hth-type transcriptional regulator benm; PDBTitle: crystal structure of the effector binding domain of a benm variant2 (benm r156h/t157s) Resolution 1.80 Å

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		21	.	.	.	.	.	.	.	.	30	.	.		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		D	I	Q	L	L	N	V	S	Y	D	P	T	.	R	E	L	Y	E	Q	Y	N	K	A	F	S	A	H	W	K	Q	Q	T	G	D	N	V	V	I	R	Q	S	H	G	G	S	G	K	Q	A	T	S	V	I	N	G	I	E	A	D	V	V	T	L	A	L	A	Y	D	V	D	A	I	A	E	R	G	R	I	D	K
Query Conservation														.
Alig confidence														.																.	.	.	.	.																								.										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.																								.										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	K	T	I	R	I	G	F	V	G	S	L	L	F	G	L	L	P	R	I	I	H	L	Y	R	Q	A	H	.	.	.	.	.	P	N	L	R	I	E	L	Y	E	M	G	T	K	A	Q	T	E	A	L	K	E	G	R	.	I	D	A	G	F	G	R	L	K	.	.	.	.	.	.	.	.	.	.	.	.	.	I
Template Known Secondary structure											G	G	G	G	G	T	T													.	.	.	.	.	T	T																				T	S	.		S					S	S		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																														.	.	.	.	.																								.										.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.						.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.		140	.	.	.	.	.	.	.	.														.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	W	I	K	R	L	P	D	N	S	A	P	Y	T	S	T	I	V	F	L	V	R	K	G	N	P	K	Q	I	H	D	W	N	D	L	I	K	P	G	V	S	V	I	T	P	N	P	K	S	S	G	G	A	R	W	N	Y	L	A	A	W	G	Y	A	L	H	H	N	N	N	D	Q	A	K	A	Q	D	F	V	R
Query Conservation
Alig confidence																																																																										.	.	.	.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.	.	.	.
Template Sequence		S	D	P	A	I	K	H	S	L	L	R	N	E	R	L	M	V	A	V	H	A	S	H	P	L	N	Q	M	K	D	K	G	V	H	L	N	D	L	I	D	E	K	I	L	L	Y	P	S	S	P	K	P	N	F	S	T	H	V	M	N	I	F	S	D	H	G	L	E	P	T	K	I	.	.	.	.	.	.	.	.
Template Known Secondary structure				T	T																	T	T	S	G	G	G	G	G	T	T	T		B		G	G	G	S	T	T	S								S	S	S	S	S											T	T	T				S			.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	Y	K	N	V	E	V	L	D	S	G	A	R	G	S	T	N	T	F	V	E	R	G	I	G	D	V	L	I	A	W	E	N	E	A	L	L	A	A	N	E	L	G	K	D	K	F	E	I	V	T	P	S	E	S	I	L	A	E	P	T	V	S	V	V	D	K	V	V	E	K	K	G	T	K	E	V	A	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																												.	.	.	.	.	.															.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																												.	.	.	.	.	.															.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	N	E	V	R	E	V	Q	L	A	L	G	L	V	A	A	G	E	G	I	S	L	V	P	A	S	T	Q	.	.	.	.	.	.	S	I	Q	L	F	N	L	S	Y	V	P	L	L	D	.	.	.	.	P	D	A	I	T	P	I	Y	I	A	V	R	N	M	E	E	S	T	Y	I	Y
Template Known Secondary structure		.	.	.	.	.	.	.	.				S											T	T	S		B					G	G	G	G	.	.	.	.	.	.	G				T	T						B		S	.	.	.	.	T	T											S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																												.	.	.	.	.	.															.	.	.	.
Template SS confidence
										222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.							.	250	.	.	.	.	.	.	.	.	.	260	.	.					.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	L	K	Y	L	Y	S	P	E	G	Q	E	I	A	A	K	N	Y	Y	R	P
Query Conservation
Alig confidence								.	.	.	.	.
Template Conservation								.	.	.	.	.
Template Sequence		S	L	Y	E	T	I	.	.	.	.	.	R	Q	I	Y	A	Y	E	G	F	T	E
Template Known Secondary structure								.	.	.	.	.								T
Template Predicted Secondary structure								.	.	.	.	.
Template SS confidence
		284	.	.	.	.	.						290	.	.	.	.	.	.	.	.	.	300

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions