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Job DescriptionP0AG78
Confidence99.85%DateWed Jan 25 15:20:33 GMT 2012
Rank40Aligned Residues268
% Identity13%Templatec2gh9A_
PDB info PDB header:sugar binding proteinChain: A: PDB Molecule:maltose/maltodextrin-binding protein; PDBTitle: thermus thermophilus maltotriose binding protein bound with2 maltotriose
Resolution1.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60.... .....70.........80.........90........
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Query Sequence  DIQLLNVSYDPTRELYEQYNKAFSAHWKQQTGDNVVIRQSHGGS. . GKQATSVINGIEADVVTLALAYDVDAIAERGRID
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Template Sequence  KITVWTHFGGPELEWLKEQARTFER. . . . TSGTKVEVVEVPFAEIKQKFILGAPQGQAADLVVTVPHDWVGEMAQAGVLE
Template Known Secondary structure 



....TTS



GGGT
S
SGGGTT
B
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   2.......10.........20...... ...30.........40.........50.........60.........70.......
 
   99100...... ...110.........120....... ..130.........140.........150.......
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Query Sequence  KEWIKRLP. . . . . . . . . . . . . . . . . . . . DNSAPYTSTIVFLVRKGNPKQ. IHDWNDLIKPGVSVITPNPKSSGGARWNYL
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Template Sequence  PVGKYVTQAYLADLQGVAVEAFTFGGRLMGLPAFAESVALIYNKKYVKEPPRTWEEFLALAQKLTTGATFGFLYNIGDPY
Template Known Secondary structure 

GGGS
B
TTT
S

TTT
SS

SS
SSS


TT
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   78.80.........90.........100.........110.........120.........130.........140.........150.......
 
   158.160........ .170.........180.........190. ........200.........210.....
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Query Sequence  AAWGYALHHNN. . . . . . . . . . . . . . . . . . . . . NDQAKAQDFVRALYKNVEVLDSG. ARGSTNTFVERGIGDVLIAWENEA
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Template Conservation                                        
     
                      
  
         
Template Sequence  FNFGFFKAFGAENVFAKDAKGNLDPTKLLIGGEVGEKALQFIKDLRFKYNLVPEGVDYGVADGAFKDGALAMILNGPWAL
Template Known Secondary structure  T
SSSTTTSSSTS

S
TT

T

GGG
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   158.160.........170.........180.........190.........200.........210.........220.........230.......
 
   216...220.........230........ .240.........250.........260.........270....... ..280.........290.
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Query Sequence  LLAANELGKDKFEIVTPSESILA. . . EPTVSVVDKVVEKKGTKEVAEAYLKYLYSPEGQEIAAKN. YYRPRDAEVAKKYE
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Template Sequence  GDYKKAKVDFGIAPFPVPPGAKNPWGPFLGVQGVVVNAYSKNKTQAVNFAKTLVTGRNLVAFNQAGGRIPVSKSAVKQLE
Template Known Secondary structure  TT






TT
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BTT
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BTT
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   238.240.........250.........260.........270.........280.........290.........300.........310.......
 
   292
Predicted Secondary structure 
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Query Sequence  N
Query Conservation   
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Template Conservation   
Template Sequence  K
Template Known Secondary structure  T
Template Predicted Secondary structure 
Template SS confidence 
   318
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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