Job Description P0AG78 Confidence 71.62% Date Wed Jan 25 15:20:33 GMT 2012 Rank 120 Aligned Residues 249 % Identity 9% Template c2g29A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein nrta; PDBTitle: crystal structure of the periplasmic nitrate-binding2 protein nrta from synechocystis pcc 6803 Resolution 1.50 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		M	A	K	D	I	Q	L	L	N	V	S	Y	D	P	T	R	E	L	Y	E	Q	Y	N	K	A	F	S	A	H	W	K	Q	Q	T	G	D	.	N	V	V	I	R	Q	S	H	G	G	S	G	K	Q	A	T	S	V	I	N	G	I	E	A	D	V	V	T	L	A	L	A	Y	D	V	D	A	I	A	E	R	G	R
Query Conservation																																						.
Alig confidence																			.																			.
Template Conservation																			.
Template Sequence		N	A	P	E	V	T	T	A	K	L	G	F	I	A	L	T	D	.	A	A	P	L	I	I	A	K	E	K	G	F	Y	A	K	Y	G	M	P	D	V	E	V	L	K	Q	A	S	W	G	T	T	R	D	N	L	V	L	G	S	A	S	G	G	I	D	G	A	H	I	L	T	P	M	P	Y	L	I	T	M	G	T
Template Known Secondary structure					S		S								S	S	G	G	.	G									T	T					T	T		T	T							S													G	G	G	T	S		S						T										T
Template Predicted Secondary structure																			.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.										.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.
Query Sequence		I	D	K	E	W	I	K	R	L	P	D	N	S	A	P	Y	T	S	T	I	V	F	L	V	R	K	G	N	P	K	Q	.	.	.	.	.	.	.	.	.	I	H	D	W	N	D	L	I	K	P	G	V	S	V	I	T	P	N	P	K	S	S	G	G	A	R	W	N	Y	L	A	A	W	G	Y	A	L	H	H	N
Query Conservation																																	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.	.											.	.	.	.
Template Conservation																																																				.	.	.	.
Template Sequence		V	T	D	G	K	P	T	P	M	Y	I	L	A	R	L	N	V	N	G	Q	G	I	Q	L	G	N	N	Y	K	D	L	K	V	G	T	D	A	A	P	L	K	E	A	F	A	K	V	T	D	P	.	.	.	.	K	V	A	M	T	F	P	G	G	T	H	D	M	W	I	R	Y	W	L	A	A	G	G	M	E	P
Template Known Secondary structure		T	S	S	S													B	S								G	G	G	G	G	G				S			T	T							T	S	S	S		.	.	.	.					S	S	T	T	S													T	T			B
Template Predicted Secondary structure																																																				.	.	.	.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.					.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	N	D	Q	A	K	A	Q	D	F	V	R	A	L	Y	K	N	V	E	V	L	D	S	G	A	R	G	S	T	N	T	F	V	E	R	G	I	G	D	V	L	I	A	W	E	N	E	A	L	L	A	A	N	E	L	G	K	D	K	F	E	I	V	T	P	S	E	S	I	L	A	E	P	T	V	S	V	V	D	K
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.
Template Sequence		G	K	D	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	I	V	V	P	P	A	Q	M	V	A	N	V	K	V	N	A	M	E	S	F	C	V	G	E	P	W	P	L	Q	T	V	N	.	.	Q	G	V	G	Y	Q	A	L	T	T	G	Q	L	W	K	D	H	P	E	K	A	F	G	M	R
Template Known Secondary structure		T	T	T	B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							G	G	G							T	T	S		S						T	T								.	.		T	S							G	G	G	T	B	T	T		B
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.
Template SS confidence
		212	.	.	.																.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.			250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.								.	.	.	.					.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.					.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.					.	.	.	.
Query Sequence		V	V	E	K	K	G	T	K	E	V	A	E	A	Y	L	K	.	.	.	.	.	.	.	Y	L	Y	S	.	.	.	.	P	E	G	Q	E	I	A	A	K	N	Y	Y	R	P	R	D	A	E	V	A	K
Query Conservation																		.	.	.	.	.	.	.					.	.	.	.
Alig confidence																		.	.	.	.	.	.	.					.	.	.	.
Template Conservation
Template Sequence		A	D	W	V	D	Q	N	P	K	A	A	K	A	L	L	M	A	V	M	E	A	Q	Q	W	C	D	Q	A	E	N	K	E	E	M	C	Q	I	L	S	K	R	E	W	F	K	V	P	F	E	D	I	I
Template Known Secondary structure																													G	G	G										S	T	T	T	T				G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions