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Job DescriptionP0AG78
Confidence36.13%DateWed Jan 25 15:20:33 GMT 2012
Rank130Aligned Residues210
% Identity11%Templatec2f7cA_
PDB info PDB header:gene regulationChain: A: PDB Molecule:hth-type transcriptional regulator catm; PDBTitle: catm effector binding domain with its effector cis,cis-muconate
Resolution2.16 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   23......30.. .......40.........50.........60.........70.........80.........90.........100.
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Query Sequence  QLLNVSYDPT. RELYEQYNKAFSAHWKQQTGDNVVIRQSHGGSGKQATSVINGIEADVVTLALAYDVDAIAERGRIDKEW
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Template Sequence  TLRIGYVSSLLYGLLPEIIYLFRQQN. . . . . PEIHIELIECGTKDQINALKQGK. IDLGFGRLK. . . . . . . . . . . . . . . I
Template Known Secondary structure 
GGGGGTT
.....TTS

TTS.
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   91........100.........110...... ...120.........130......... 140........ .
 
   102.......110.........120.........130.........140.........150.........160.........170.........180.
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Query Sequence  IKRLPDNSAPYTSTIVFLVRKGNPKQIHDWNDLIKPGVSVITPNPKSSGGARWNYLAAWGYALHHNNNDQAKAQDFVRAL
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Template Sequence  TDPAIRRIVLHKEQLKLAIHKHHHPNQFAATGVHLSQIIDEPMLLYPVSQKPNFATFIQSLFTELGLVPS. . . . . . . . . .
Template Known Secondary structure 
BTTTTS
TTTS
TT
B
GGGGTTS


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   150.........160.........170.........180.........190.........200.........210.........
 
   182.......190.........200.........210.........220.........230.........240.........250.........260.
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Query Sequence  YKNVEVLDSGARGSTNTFVERGIGDVLIAWENEALLAANELGKDKFEIVTPSESILAEPTVSVVDKVVEKKGTKEVAEAY
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Template Sequence  . . . . KLTEIREIQLALGLVAAGEGVCIVPASAM. . . . . . DIGVKNLLYIPILDDDA. . . . YSPISLAVRNMDHSNYIPKI
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SSTS
GGGG......GSS
SSB
STT
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   220.........230.........240........ .250.........260..... ....270.........280.....
 
   262.......270.........280..
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Query Sequence  LKYLYSPEGQEIAAKNYYRPR
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Template Sequence  LACV. . . . . QEVFATHHIRPL
Template Known Secondary structure  .....TT


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   286... 290.........300.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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