Job Description P0AG78 Confidence 98.61% Date Wed Jan 25 15:20:33 GMT 2012 Rank 82 Aligned Residues 245 % Identity 11% Template c2f5xC_ PDB info PDB header:transport protein Chain: C: PDB Molecule:bugd; PDBTitle: structure of periplasmic binding protein bugd Resolution 1.72 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.			.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																																																															.	.
Query SS confidence																																																															.	.
Query Sequence		M	A	K	D	I	Q	L	L	N	V	S	Y	D	P	T	R	E	L	Y	E	Q	Y	N	K	A	F	S	A	H	W	K	Q	Q	T	G	D	N	V	V	I	R	Q	S	H	G	G	S	G	K	Q	A	T	S	V	I	N	G	I	E	A	D	.	.	V	V	T	L	A	L	A	Y	D	V	D	A	I	A	E	R	G
Query Conservation																																																															.	.
Alig confidence																	.	.																																													.	.
Template Conservation																	.	.
Template Sequence		P	E	R	P	V	N	X	V	V	P	F	A	A	G	G	.	.	P	T	D	N	V	A	R	S	L	A	E	S	X	R	P	T	L	G	E	T	V	V	V	E	N	K	G	G	A	G	G	T	I	G	T	T	Q	V	A	R	A	Q	P	D	G	Y	S	I	L	L	X	H	A	G	F	S	T	A	P	S	L	Y	K
Template Known Secondary structure			S	S							S	S		T	T	S	.	.																		S	S										G	G	G									T	S		S	S	S	S							T					G	G	G	T		S
Template Predicted Secondary structure																	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.			.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140			.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure																																															.	.
Query SS confidence																																															.	.
Query Sequence		R	I	D	K	E	W	I	K	R	L	P	D	N	S	A	P	Y	T	S	T	I	V	F	L	V	R	K	G	N	P	K	Q	I	H	D	W	N	D	L	I	K	P	G	V	S	.	.	V	I	T	P	N	P	K	S	S	G	G	A	R	W	N	Y	L	A	A	W	G	Y	A	L	H	H	N	N	N	D	Q	A	K
Query Conservation																																															.	.
Alig confidence																															.	.															.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																															.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	P	G	Y	E	P	Y	T	S	F	E	P	I	G	L	V	V	D	V	P	X	T	I	I	A	R	G	D	F	.	.	P	P	N	N	I	K	E	L	A	E	Y	V	K	K	N	A	D	K	I	S	L	A	N	A	G	I	G	A	A	S	H	L	C	G	T	X	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				S	S		T	T	T	S																		T	T		.	.	S			S												G	G	G						S		T	T	S									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																															.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.			110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230														.	.	.	.	.	.	.		.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.								.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.								.
Query Sequence		A	Q	D	F	V	R	A	L	Y	K	N	V	E	V	L	D	S	G	A	R	G	S	T	N	T	F	V	E	R	G	I	G	D	V	L	I	A	W	E	N	E	A	L	L	A	A	N	E	L	G	K	D	K	F	E	I	V	.	.	.	.	.	.	.	.	.	.	.	.	.	T	P	S	E	S	I	L	.	A	E
Query Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.								.
Alig confidence		.	.	.																																																							.	.	.	.	.	.	.	.	.	.	.	.	.								.
Template Conservation		.	.	.
Template Sequence		.	.	.	L	V	E	A	L	G	V	N	L	L	T	I	P	Y	K	G	T	A	P	A	X	N	D	L	L	G	K	Q	V	D	L	X	C	D	Q	T	T	N	T	T	Q	Q	I	T	S	G	K	V	K	A	Y	A	V	T	S	L	K	R	V	P	T	L	P	D	L	P	T	X	D	E	S	G	Y	K	G	F	E
Template Known Secondary structure		.	.	.						T									S	S										T	T	S	S																	T	S								S	S	S			T	T	S	T	T	S		B	T	T	T	T	T		T	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.				.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure																	.	.	.
Query SS confidence																	.	.	.
Query Sequence		P	T	V	S	V	V	D	K	V	V	E	K	K	G	T	.	.	.	K	E	V	A	E	A	Y	L	K	Y	L	Y	S	P	E	G	Q	E	I	A	A	K	N	Y	Y	R	P	R
Query Conservation																	.	.	.
Alig confidence																	.	.	.
Template Conservation
Template Sequence		V	G	I	W	H	G	X	W	A	P	K	G	T	P	K	P	V	V	D	K	L	V	K	S	L	Q	A	G	L	A	D	P	K	F	Q	E	R	X	K	Q	L	G	A	E	V	L
Template Known Secondary structure												T	T																													T	T
Template Predicted Secondary structure
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions