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Job DescriptionP0AG78
Confidence99.82%DateWed Jan 25 15:20:33 GMT 2012
Rank53Aligned Residues262
% Identity13%Templatec2b3fD_
PDB info PDB header:sugar binding proteinChain: D: PDB Molecule:glucose-binding protein; PDBTitle: thermus thermophilus glucose/galactose binding protein2 bound with galactose
Resolution1.56 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   22....... 30.........40.........50.........60.... .....70.........80 .........90...
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Query Sequence  IQLLNVSY. . DPTRELYEQYNKAFSAHWKQQTGDNVVIRQSHGGS. . . . . GKQATSVINGIEADVV. TLALAYDVDAIAE
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Template Sequence  MKLEIFSWWAGDEGPALEALIRLYKQKY. . . PGVEVINATVTGGAGVNARAVLKTRMLGGDPPDTFQVHAGMELIGTWVV
Template Known Secondary structure 
S

GGG

...TT



GGGTT


STTTTTTT
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   1........10.........20........ .30.........40.........50.........60.........70.......
 
   94.....100.. .......110.........120... ......130...... ...
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Query Sequence  RGRIDKEWI. . . . . . . . . . . . . . . . . . . . . . KRLPDNSAPYTSTIVFLVRKG. . . . . NPKQIHDWNDLIK. . . . . . . PGV
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Template Sequence  ANRMEDLSALFRQEGWLQAFPKGLIDLISYKGGIWSVPVNIHRSNVMWYLPAKLKGWGVNPPRTWDKFLATCQTLKQKGL
Template Known Secondary structure  TT
B


T
TTTS
TT



BS

T



SSTT
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   78.80.........90.........100.........110.........120.........130.........140.........150.......
 
   140.........150.........160...... ...170.........180.........190. ........200......
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Query Sequence  SVITPNPKSSGGARWNYLAAWGYALHH. . . . . . . . . . . . NNNDQAKAQDFVRALYKNVEVLDSG. ARGSTNTFVERGIGD
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Template Sequence  EAPLALGENWTQQHLWESVALAVLGPDDWNNLWNGKLKFTDPKAVRAWEVFGRVLDCANKDAAGLSWQQAVDRVVQGKAA
Template Known Secondary structure  S



STTSS
TTSTTB
TTGGG

TTS
S
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   158.160.........170.........180.........190.........200.........210.........220.........230.......
 
   207..210.........220... ......230.........240.........250.........260.........270....... ..280..
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Query Sequence  VLIAWENEALLAANELG. . . KDKFEIVTPSESILAEPTVSVVDKVVEKKGTKEVAEAYLKYLYSPEGQEIAAKN. YYRPR
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Template Sequence  FNIMGDWAAGYMTTTLKLKPGTDFAWAPSPGTQGVFMMLSDSFGLPKGAKNRQNAINWLRLVGSKEGQDTSNPLKGSIAA
Template Known Secondary structure 

TTT


BTTTB
TT
TT


BTT
TTTSS
B
S
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   238.240.........250.........260.........270.........280.........290.........300.........310.......
 
   283...
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Query Sequence  DAEV
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Template Conservation      
Template Sequence  RLDS
Template Known Secondary structure  STT
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   318.320.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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