Job Description P0ADW6 Confidence 99.60% Date Thu Jan 5 11:21:59 GMT 2012 Rank 7 Aligned Residues 212 % Identity 13% Template c3rfaA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:ribosomal rna large subunit methyltransferase n; PDBTitle: x-ray structure of rlmn from escherichia coli in complex with s-2 adenosylmethionine Resolution 2.05 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.											.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.
Query Sequence		L	H	G	G	F	S	C	P	N	R	D	G	T	I	G	R	G	G	C	T	F	C	N	V	A	S	F	A	D	E	A	Q	Q	H	R	S	I	A	E	Q	L	A	H	Q	A	N	L	V	N	.	.	.	.	.	.	.	.	.	.	R	A	K	R	Y	L	A	Y	F	Q	A	Y	T	S	T	F	A	E	V	Q	V
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.										.	.																					.	.	.	.	.	.	.	.	.	.																.
Template Conservation												.	.	.	.	.	.	.	.										.	.																																														.
Template Sequence		V	S	S	Q	V	G	C	A	L	E	.	.	.	.	.	.	.	.	C	K	F	C	S	T	A	Q	Q	.	.	G	F	N	R	N	L	R	V	S	E	I	I	G	Q	V	W	R	A	A	K	I	V	G	A	A	K	V	T	G	Q	R	P	I	T	N	V	V	M	M	G	M	G	E	P	L	.	L	N	L	N	N
Template Known Secondary structure									S	S		.	.	.	.	.	.	.	.		T	T		G	G	G	T	T	.	.																													S	S		S		S						S	S	S		G	G	.	G
Template Predicted Secondary structure												.	.	.	.	.	.	.	.										.	.																																														.
Template SS confidence
		119	120	.	.	.	.	.	.	.	.									.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.		.	.	.	.	.
		97	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.				.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure												.																																																				.	.	.
Query SS confidence												.																																																				.	.	.
Query Sequence		L	R	S	M	Y	Q	Q	A	V	S	.	Q	A	N	I	V	G	L	C	V	G	T	R	P	D	C	V	P	D	A	V	L	D	L	L	C	E	Y	K	D	Q	G	Y	E	V	W	L	E	L	G	L	Q	T	A	H	D	K	T	L	H	R	I	.	.	.	N	R	G	H	D	F	A	C	Y	Q	R	T	T	Q	L
Query Conservation												.																																																				.	.	.
Alig confidence												.																																.	.	.	.																	.	.	.
Template Conservation																																												.	.	.	.
Template Sequence		V	V	P	A	M	E	I	M	L	D	D	F	G	F	G	L	S	K	R	R	V	T	L	S	T	S	G	V	V	P	A	L	D	K	L	G	D	M	I	D	V	A	.	.	.	.	L	A	I	S	L	H	A	P	N	D	E	I	R	D	E	I	V	P	I	N	K	K	Y	N	I	E	T	F	L	A	A	V	R	R
Template Known Secondary structure											S	T	T	T	T				G	G	G						S																	.	.	.	.								S	S								S	G	G	G	G	T	S
Template Predicted Secondary structure																																												.	.	.	.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.					230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		173	.	.	.	.	.	.						180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.
Query SS confidence									.	.	.	.	.
Query Sequence		A	R	Q	R	G	L	K	.	.	.	.	.	V	C	S	H	L	I	V	G	L	P	G	E	G	Q	A	E	C	L	Q	T	L	E	R	V	V	E	T	G	V	D	G	I	K	L	H	P	L	H	I	V	K	G	S	I	M	A	K	A	W	E	A	G	R	L	N	G	I	E	L	E	D	Y	T	L	T	A	G	E
Query Conservation									.	.	.	.	.
Alig confidence									.	.	.	.	.																												.																		.	.	.	.	.	.	.	.	.	.
Template Conservation																																									.																		.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	L	E	K	S	N	A	N	Q	G	R	V	T	I	E	Y	V	M	L	D	H	V	N	D	G	T	E	H	A	H	Q	L	A	E	L	L	K	D	T	.	P	C	K	I	N	L	I	P	W	N	P	F	P	G	A	P	Y	.	.	.	.	.	.	.	.	.	.	G	R	S	S	N	S	R	I	D	R	F	S	K
Template Known Secondary structure							T	T	T	T	T									B	T	T	T	T		S											T	T	T	S	.													T	T				.	.	.	.	.	.	.	.	.	.		B
Template Predicted Secondary structure																																									.																		.	.	.	.	.	.	.	.	.	.
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.		.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.											320	.	.	.	.	.	.	.	.	.	330	.	.
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	R	H	T	P	P	E	V	I	Y	H	R	I	S	A	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	M	S	Y	G	F	T	T	I	V	R	K	T	R	G	D
Template Known Secondary structure						T	T
Template Predicted Secondary structure
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions