 |
| Job Description | P0ADW6 | | Confidence | 78.97% | Date | Thu Jan 5 11:21:59 GMT 2012 |
| Rank | 95 | Aligned Residues | 61 |
| % Identity | 8% | Template | c1ud8A_ |
| PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:amylase; |
PDBTitle: crystal structure of amyk38 with lithium ion
|
| Resolution | 2.88 Å |
|
| | |
125 | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | |
|
|
|
|
. | . | . | |
|
|
|
|
|
|
|
|
|
|
. | . | . | 160 | . | |
. | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . |
| Predicted Secondary structure | |
 | | | | | | | | |
|
|
|  | | | | | |  |
|
|
|
|
|
|
| | | | . | . | . | . | . | | | | . | . | . | . | . | . | . | . | . | . | . | |
|
|
|
| . |
| | | | | | | | | | | | | |
|
|
| | | | | | | | |
|
| Query SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence | |
A | V | L | D | L | L | C | E | Y | K | D | Q | G | Y | E | V | W | L | E | L | G | L | Q | T | A | H | D | K | T | . |
. |
. |
. |
. |
L | H | R | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
I | N | R | G | H | . |
D | F | A | C | Y | Q | R | T | T | Q | L | A | R | Q | R | G | L | K | V | C | S | H | L | I | V | G |
| Query Conservation | |
| |
| | |
| | | |
| | | | | |
| |
|
| |
|
|
|
| | | | | | . | . | . | . | . |
| | | . | . | . | . | . | . | . | . | . | . | . |
| |
|
| | . | | | | | | | | | | | | | | | |
|
| |
| | | | |
| |
|
| Alig confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation | |
|
|
|
|
|
| | |
|
|
|
|
| . | . |
|
|
| |
|
| | | | | | | | | |
|
| | | |
| |
| | | | | | | | | | |
|
| | | |
|
| | |
|
|
| |
|
| | |
|
| | |
|
| |
|
|
|
| |
| |
|
| Template Sequence | |
D | D | A | A | A | L | S | D | A | G | I | T | A | . |
. |
I | W | I | P | P | A | Y | K | G | N | S | Q | A | D | V | G | Y | G | A | Y | D | L | Y | D | L | G | E | F | N | Q | K | G | T | V | R | T | K | Y | G | T | K | A | Q | L | E | R | A | I | G | S | L | K | S | N | D | I | N | V | Y | G | D | V | V | M | N |
| Template Known Secondary structure | |
| | | | | | | | | T |
|
| | . | . | | | |
|
|
| S | | | S | S | T | T |
|
| S | S | S | | | | T | T |
| S | S |
| S |
| B | T | T | B | S | S |
| S | S |
|
| | | | | | | | | | | | | | T | T |
| | | | | | |
|
| S |
| Template Predicted Secondary structure | |
| | | | | | | |
|
|
|
| | . | . | | | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| | | | | | | | | | | | | |
|
|
| | | | | | | | |
|
| Template SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| | |
27 | . | . | 30 | . | . | . | . | . | . | . | . | . | |
|
40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . |
| |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
| |
|
|
|
