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Job DescriptionP08331
Confidence100.00%DateWed Jan 25 15:20:13 GMT 2012
Rank9Aligned Residues460
% Identity13%Templatec3c9fB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:5'-nucleotidase; PDBTitle: crystal structure of 5'-nucleotidase from candida albicans sc5314
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   23......30.........40.........50.........60.. .......70.........80....... ..90.........
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Query Sequence  DLRIMETTDLHSNMMDFDYYKDTATEKFGLVRTASLINDA. RNEVKNSVLVDNGDLIQGSPLADYM. . SAKGLKAGDIHP
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Template Sequence  DINFVHTTDTHGWYSGHINQPLYHANWGDFISFTTHMRRIAHSRNQDLLLIDSGDRHDGNGLSDITSPNGLK. . . . . . . .
Template Known Secondary structure  S


TT
TT

SS
GGG


TT

S

SSS
SSSSTTTT........
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   26...30.........40.........50.........60.........70.........80.........90.......
 
   100.........110.........120.. .......130.........140......... 150.........160.........170...
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Query Sequence  VYKALNTLDYTVGTLGNHEFNYG. . . LDYLKNALAGAKFPYVNANVIDARTKQ. . . PMFTPYLIKDTEVVDKDGKKQTLK
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Template Sequence  STPIFIKQDYDLLTIGNHELYLWENSKQEYETVVNHFQDKYVCSNVDIRLDNGLFVPLGLKYKYFTT. . . . . . . PIRGIR
Template Known Secondary structure  TTTS

S


GGGTSSTTTTTBB
SS
TTS
SSBS

.......TTT

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   98.100.........110.........120.........130.........140.........150.........160.... .....170
 
   174.....180.........190.........200...... ...210.........220.........230.........240.........250..
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Query Sequence  IGYIGVVPPQIMGWDKANLSGKVTVNDITETVR. KYVPEMREKGADVVVVLAHSGLSADPYKVMAENSVYYLSEIPGVNA
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Template Sequence  VMAFGFLFDFK. . . . . . RFNSGTRVTPMAETIHEPWFQEALKHEVDLIIIVGHTPISHNWGEFYQVHQYLRQFFPDTIIQ
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TT

TTSTTS

S
SS


TTT

TTS
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   171........180. ........190.........200.........210.........220.........230.........240....
 
   253......260.........270.........280.........290.........300....... ..310.........320....
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Query Sequence  IMFGHAHAVFPGKDFADIEGADIAKGTLNGVPAVMPGMWGDHLGVVDLQLSNDSG. . . . . . . . KWQVTQAKAEARPIYDI
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Template Sequence  YFGGHSHIRDFTVF. . . . . . . . . . . . . DSLSTGLQSGRYCETVGWTSVNLDKADLNLPVRQRFSRSYIDFNTDSFKYHTN
Template Known Secondary structure 
SS

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STTS



GGG


SST
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   245....250........ .260.........270.........280.........290.........300.........310.
 
   325....330.........340.........350.........360........ .370.........380.........390.........400...
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Query Sequence  ANKKSLAAEDSKLVETLKADHDATRQFVSKPIGKSADNMYSYLA. LVQDDPTVQVVNNAQKAYVEHYIQGDPDLAKLPVL
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Template Sequence  LDKEFDTAKGKLVSKLIRETRKELK. . LDTLIGYVKTNYYVDYVPIDHPKSIFNLLALKILKTLPKSKHEERI. . . . . . .
Template Known Secondary structure 
STT


TT..TT

S
BBSSSS
TTSTTBTTGGGS


TT

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   312.......320.........330...... ...340.........350.........360.........370.........380..
 
   404.....410.........420.........430.........440.........450.........460 .........470.........480.
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Query Sequence  SAAAPFKVGGRKNDPASYVEVEKGQLTFRNAADLYLYPNTLIVVKASGKEVKEWLEC. . SAGQFNQIDPNSTKPQSLINW
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Template Sequence  . . . . . . . . . TIINTGSIRYDLYKGPYTIDSKFIVSPFENIWVNITVPKSVATKVAAKLNDISASRLKPPHQYDLQVQL. .
Template Known Secondary structure  .........GGG

S
B
S





TT


SS

S
TTTT





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   383......390.........400.........410.........420.........430.........440.........450.
 
   482.......490.........500.........510....... ..520.........530.........540......
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Query Sequence  DGFRTYNFDVIDGVNYQIDVTQPARYDGECQMINAN. . . . . . . . . . . . . AERIKNLTFNGKPIDPNAMFLVATNNYRA
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Template Sequence  . . . . . . . STSPHQAHFEMQEKLPKGYVTHDDFGADGDDTLHRAVVNFPVPNVIQSVEIND. . . EVDSPVNLVFYSFIT
Template Known Secondary structure  .......
SS
TT





TTS




BTTBS

BSB








S
SS...SS

GGG
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   456...460.........470.........480.........490.........500........ .510.........520...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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