Job Description P08331 Confidence 99.12% Date Wed Jan 25 15:20:13 GMT 2012 Rank 26 Aligned Residues 204 % Identity 16% Template c3av0A_ PDB info PDB header:recombination Chain: A: PDB Molecule:dna double-strand break repair protein mre11; PDBTitle: crystal structure of mre11-rad50 bound to atp s Resolution 3.10 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	I	M	E	T	T	D	L	H	S	N	M	M	D	F	D	Y	Y	K	D	T	A	T	E	K	F	G	L	V	R	T	A	S	L	I	N	D	A	R	N	E	V	K	N	S	V	L	V	D	N	G	D	L	I	Q	G	S	P	L	A	D	Y	M	S	A	K	G	L	K	A	G	D	I	H	P	V	Y	K	A
Query Conservation
Alig confidence																												.	.	.																					.																					.	.	.	.	.	.
Template Conservation																												.	.	.																					.																					.	.	.	.	.	.
Template Sequence		M	M	F	V	H	I	A	D	N	H	L	G	Y	R	Q	Y	N	L	D	D	R	E	K	D	I	Y	.	.	.	D	S	F	K	L	C	I	K	K	I	L	E	I	K	P	D	V	V	L	H	.	S	G	D	L	F	N	D	L	R	P	P	V	K	A	L	R	I	A	M	Q	.	.	.	.	.	.	A	F	K	K
Template Known Secondary structure												B	T			G	G	G										.	.	.												T	T			S					.		S		S	B	S	S	S	S												.	.	.	.	.	.
Template Predicted Secondary structure																												.	.	.																					.																					.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.				.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.							.	.	.	70
		104	.	.	.	.	.	110	.	.	.	.		.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		L	N	T	L	D	Y	T	V	G	T	L	.	G	N	H	E	F	N	Y	G	L	D	Y	L	K	N	A	L	A	G	A	K	F	P	Y	V	N	A	N	V	I	D	A	R	T	K	Q	P	M	F	T	P	Y	L	I	K	D	T	E	V	V	D	K	D	G	K	K	Q	T	L	K	I	G	Y	I	G	V	V	P	P
Query Conservation													.
Alig confidence													.																									.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.											.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.											.	.	.
Template Sequence		L	H	E	N	N	I	K	V	Y	I	V	A	G	N	H	E	M	P	R	R	L	G	E	E	S	P	L	A	L	L	K	D	Y	V	K	I	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	G	K	D	V	I	N	V	.	.	.	.	.	.	.	.	.	N	G	E	E	I	F	I	C	G	T	.	.	.
Template Known Secondary structure					T	T									G	G	G	S		S	S	T	T	S			G	G	G	G	G	T	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.		S								.	.	.	.	.	.	.	.	.	T	T									.	.	.
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.											.	.	.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.														.	.	.	110	.	.	.	.	.										.	.	.	.	120	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	M	G	W	D	K	A	N	L	S	G	K	V	T	V	N	D	I	T	E	T	V	R	K	Y	V	P	E	M	R	E	K	G	A	D	V	V	V	V	L	A	H	S	G	L	S	A	D	P	Y	K	V	M	A	E	N	S	V	Y	Y	L	S	E	I	P	G	V	N	A	I	M	F	G	H	A	H	A	V	F
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																									.	.																							.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																									.	.																							.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	Y	Y	H	K	K	S	K	R	E	E	M	L	D	K	L	K	N	F	E	S	E	A	K	N	.	.	Y	K	K	K	I	L	M	L	H	Q	G	I	N	P	Y	I	P	L	D	Y	E	L	.	.	.	.	E	H	F	D	L	P	K	F	S	Y	Y	A	L	G	H	I	H	K	R	I
Template Known Secondary structure		.	.	.	.	.	.	.	.					S	T	T																	T	.	.		S	S										T	T	T	S	S	S	S		S	S	.	.	.	.		G	G	G	S				S						S			S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																									.	.																							.	.	.	.
Template SS confidence
										126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.			150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.					.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	K	D	F	A	D	I	E	G	A	D	I	A	K	G	T	L	N	G	V	P	A	V	M	P	G	M
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	E	R	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	D	G	I	L	A	Y	S	G	S
Template Known Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		192	.	.	.															.	.	.	.	200	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions