Job Description P08331 Confidence 98.76% Date Wed Jan 25 15:20:13 GMT 2012 Rank 31 Aligned Residues 155 % Identity 23% Template c1s3mA_ PDB info PDB header:phosphodiesterase Chain: A: PDB Molecule:hypothetical protein mj0936; PDBTitle: structural and functional characterization of a novel2 archaeal phosphodiesterase Resolution 2.50 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	M	E	T	T	D	L	H	S	N	M	M	D	F	D	Y	Y	K	D	T	A	T	E	K	F	G	L	V	R	T	A	S	L	I	N	D	A	R	N	E	V	K	N	S	V	L	V	D	N	G	D	L	I	Q	G	S	P	L	A	D	Y	M	S	A	K	G	L	K	A	G	D	I	H	P	V	Y	K	A	L
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	I	G	I	M	S	D	T	H	D	H	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	N	I	R	K	A	I	E	I	F	N	D	E	N	V	E	T	V	I	H	.	C	G	D	F	V	S	L	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	K	E	F
Template Known Secondary structure										T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												T	S			S					.		S				S	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					G
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.																	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.		.	.	.	.	.	.	40	.																			.	.	.	.	.
		105	.	.	.	.	110	.		.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		N	T	L	D	Y	T	V	.	G	T	L	G	N	H	E	F	N	Y	G	L	D	Y	L	K	N	A	L	A	G	A	K	F	P	Y	V	N	A	N	V	I	D	A	R	T	K	Q	P	M	F	T	P	Y	L	I	K	D	T	E	V	V	D	K	D	G	K	K	Q	T	L	K	I	G	Y	I	G	V	V	P	P	Q
Query Conservation									.
Alig confidence									.										.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.
Template Sequence		E	N	L	N	A	N	I	I	A	T	Y	G	N	N	D	G	E	.	.	R	C	K	L	K	E	W	L	K	D	I	N	E	E	N	I	.	.	.	.	.	.	.	.	.	.	.	.	.	I	D	D	F	I	S	V	E	I	.	.	.	.	.	.	.	.	.	D	D	L	K	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		G	G			S								T	T				.	.													T	T			.	.	.	.	.	.	.	.	.	.	.	.	.			S							.	.	.	.	.	.	.	.	.	T	T			.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																			.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.
Template SS confidence
		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.														80	.	.	.	.	.	.	.	.										.	90	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	M	G	W	D	K	A	N	L	S	G	K	V	T	V	N	D	I	T	E	T	V	R	K	Y	V	P	E	M	R	E	K	G	A	D	V	V	V	V	L	A	H	S	G	L	S	A	D	P	Y	K	V	M	A	E	N	S	V	Y	Y	L	S	E	I	P	G	V	N	A	I	M	F	G	H	A	H	A	V	F	P
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	F	I	T	H	.	.	.	.	.	.	.	.	.	G	H	H	Q	S	V	L	E	M	A	I	K	S	G	L	Y	D	V	V	I	Y	G	H	T	H	E	R	V	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.	T	T															S						S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.
Template SS confidence
																																							93	.	.	.	.										.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.							.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure																																.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.
Query Sequence		G	K	D	F	A	D	I	E	G	A	D	I	A	K	G	T	L	N	G	V	P	A	V	M	P	G	M	W	G	D	.	.	.	.	.	.	H	L	G	V	V	D	L	Q	L	S	N	D	S	G	K	W	Q	V	T
Query Conservation																																.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.								.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Template Sequence		E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	D	D	V	L	V	I	N	P	G	E	C	C	G	Y	L	T	G	I	P	T	I	G	I	L	D	T	.	.	.	.	E	K	K	E	Y	R	E	I
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T									S	S		T	T	T	S									T	.	.	.	.	T	T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.
Template SS confidence
		127															.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.					.	.	.	.	160	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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