Secondary structure and disorder prediction

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Sequence

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Secondary structure

SS confidence

Disorder

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Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3r8t chain 2 Region: 1 - 46 Aligned: 46 Modelled: 46 Confidence: 99.9% Identity: 100% PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: structures of the bacterial ribosome in classical and hybrid states of2 trna binding Phyre2 PDB 3i1r chain 2 Region: 1 - 46 Aligned: 46 Modelled: 46 Confidence: 99.9% Identity: 100% PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the e. coli 70s ribosome in an2 intermediate state of ratcheting Phyre2 PDB 3r8s chain 2 Region: 1 - 46 Aligned: 46 Modelled: 46 Confidence: 99.9% Identity: 100% PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: structures of the bacterial ribosome in classical and hybrid states of2 trna binding Phyre2 PDB 3izu chain E Region: 1 - 46 Aligned: 46 Modelled: 46 Confidence: 99.9% Identity: 100% PDB header:ribosome Chain: E: PDB Molecule:50s ribosomal protein l3; PDBTitle: structural insights into cognate vs. near-cognate discrimination2 during decoding. this entry contains the large subunit of a ribosome3 programmed with a cognate codon Phyre2 PDB 3i20 chain 2 Region: 1 - 46 Aligned: 46 Modelled: 46 Confidence: 99.9% Identity: 100% PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the e. coli 70s ribosome in an2 intermediate state of ratcheting Phyre2 PDB 3izt chain E Region: 1 - 46 Aligned: 46 Modelled: 46 Confidence: 99.9% Identity: 100% PDB header:ribosome Chain: E: PDB Molecule:50s ribosomal protein l3; PDBTitle: structural insights into cognate vs. near-cognate discrimination2 during decoding. this entry contains the large subunit of a ribosome3 programmed with a near-cognate codon. Phyre2 PDB 2qbc chain 2 Region: 1 - 46 Aligned: 46 Modelled: 46 Confidence: 99.9% Identity: 100% PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the bacterial ribosome from2 escherichia coli in complex with gentamicin. this file3 contains the 50s subunit of the second 70s ribosome, with4 gentamicin bound. the entire crystal structure contains5 two 70s ribosomes and is described in remark 400. Phyre2 PDB 2qao chain 2 Region: 1 - 46 Aligned: 46 Modelled: 46 Confidence: 99.9% Identity: 100% PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the bacterial ribosome from2 escherichia coli in complex with neomycin. this file3 contains the 50s subunit of the second 70s ribosome, with4 neomycin bound. the entire crystal structure contains two5 70s ribosomes and is described in remark 400. Phyre2 PDB 2qba chain 2 Region: 1 - 46 Aligned: 46 Modelled: 46 Confidence: 99.9% Identity: 100% PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the bacterial ribosome from2 escherichia coli in complex with gentamicin. this file3 contains the 50s subunit of the first 70s ribosome, with4 gentamicin bound. the entire crystal structure contains5 two 70s ribosomes and is described in remark 400. Phyre2 PDB 2qam chain 2 Region: 1 - 46 Aligned: 46 Modelled: 46 Confidence: 99.9% Identity: 100% PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the bacterial ribosome from2 escherichia coli in complex with neomycin. this file3 contains the 50s subunit of the first 70s ribosome, with4 neomycin bound. the entire crystal structure contains two5 70s ribosomes and is described in remark 400. Phyre2 PDB 2z4n chain 2 Region: 1 - 46 Aligned: 46 Modelled: 46 Confidence: 99.9% Identity: 100% PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the bacterial ribosome from escherichia2 coli in complex with paromomycin and ribosome recycling3 factor (rrf). this file contains the 50s subunit of the4 second 70s ribosome, with paromomycin and rrf bound. the5 entire crystal structure contains two 70s ribosomes and is6 described in remark 400. Phyre2 PDB 2z4l chain 2 Region: 1 - 46 Aligned: 46 Modelled: 46 Confidence: 99.9% Identity: 100% PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the bacterial ribosome from escherichia2 coli in complex with paromomycin and ribosome recycling3 factor (rrf). this file contains the 50s subunit of the4 first 70s ribosome, with paromomycin and rrf bound. the5 entire crystal structure contains two 70s ribosomes and is6 described in remark 400. Phyre2 PDB 3i1n chain 2 Region: 1 - 46 Aligned: 46 Modelled: 46 Confidence: 99.9% Identity: 100% PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the e. coli 70s ribosome in an2 intermediate state of ratcheting Phyre2 PDB 3e1d chain V Region: 1 - 46 Aligned: 46 Modelled: 46 Confidence: 99.9% Identity: 100% PDB header:ribosome Chain: V: PDB Molecule:50s ribosomal protein l34; PDBTitle: structure of the 50s subunit of e. coli ribosome in post-2 accommodation state Phyre2 PDB 2qbe chain 2 Region: 1 - 46 Aligned: 46 Modelled: 46 Confidence: 99.9% Identity: 100% PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the bacterial ribosome from escherichia2 coli in complex with ribosome recycling factor (rrf). this3 file contains the 50s subunit of the first 70s ribosome,4 with rrf bound. the entire crystal structure contains two5 70s ribosomes and is described in remark 400. Phyre2 PDB 2qbg chain 2 Region: 1 - 46 Aligned: 46 Modelled: 46 Confidence: 99.9% Identity: 100% PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the bacterial ribosome from escherichia2 coli in complex with ribosome recycling factor (rrf). this3 file contains the 50s subunit of the second 70s ribosome,4 with rrf bound. the entire crystal structure contains two5 70s ribosomes and is described in remark 400. Phyre2 PDB 2qp1 chain 2 Region: 1 - 46 Aligned: 46 Modelled: 46 Confidence: 99.9% Identity: 100% PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the bacterial ribosome from escherichia2 coli in complex with spectinomycin and neomycin. this file3 contains the 50s subunit of the second 70s ribosome, with4 neomycin bound. the entire crystal structure contains two5 70s ribosomes. Phyre2 PDB 2qoz chain 2 Region: 1 - 46 Aligned: 46 Modelled: 46 Confidence: 99.9% Identity: 100% PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the bacterial ribosome from escherichia2 coli in complex with spectinomycin and neomycin. this file3 contains the 50s subunit of the first 70s ribosome, with4 neomycin bound. the entire crystal structure contains two5 70s ribosomes. Phyre2 PDB 2qbi chain 2 Region: 1 - 46 Aligned: 46 Modelled: 46 Confidence: 99.9% Identity: 100% PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the bacterial ribosome from escherichia2 coli in complex with gentamicin and ribosome recycling3 factor (rrf). this file contains the 50s subunit of the4 first 70s ribosome, with gentamicin and rrf bound. the5 entire crystal structure contains two 70s ribosomes and is6 described in remark 400. Phyre2 PDB 2qbk chain 2 Region: 1 - 46 Aligned: 46 Modelled: 46 Confidence: 99.9% Identity: 100% PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the bacterial ribosome from escherichia2 coli in complex with gentamicin and ribosome recycling3 factor (rrf). this file contains the 50s subunit of the4 second 70s ribosome, with gentamicin and rrf bound. the5 entire crystal structure contains two 70s ribosomes and is6 described in remark 400. Phyre2 1 c3r8t2_ 2 c3i1r2_ 3 c3r8s2_ 4 c3izue_ 5 c3i202_ 6 c3izte_ 7 c2qbc2_ 8 c2qao2_ 9 c2qba2_ 10 c2qam2_ 11 c2z4n2_ 12 c2z4l2_ 13 c3i1n2_ 14 c3e1dV_ 15 c2qbe2_ 16 c2qbg2_ 17 c2qp12_ 18 c2qoz2_ 19 c2qbi2_ 20 c2qbk2_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3r8t2_ 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: structures of the bacterial ribosome in classical and hybrid states of2 trna binding 2 c3i1r2_ 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the e. coli 70s ribosome in an2 intermediate state of ratcheting 3 c3r8s2_ 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: structures of the bacterial ribosome in classical and hybrid states of2 trna binding 4 c3izue_ 99.9 100 PDB header:ribosome Chain: E: PDB Molecule:50s ribosomal protein l3; PDBTitle: structural insights into cognate vs. near-cognate discrimination2 during decoding. this entry contains the large subunit of a ribosome3 programmed with a cognate codon 5 c3i202_ 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the e. coli 70s ribosome in an2 intermediate state of ratcheting 6 c3izte_ 99.9 100 PDB header:ribosome Chain: E: PDB Molecule:50s ribosomal protein l3; PDBTitle: structural insights into cognate vs. near-cognate discrimination2 during decoding. this entry contains the large subunit of a ribosome3 programmed with a near-cognate codon. 7 c2qbc2_ 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the bacterial ribosome from2 escherichia coli in complex with gentamicin. this file3 contains the 50s subunit of the second 70s ribosome, with4 gentamicin bound. the entire crystal structure contains5 two 70s ribosomes and is described in remark 400. 8 c2qao2_ 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the bacterial ribosome from2 escherichia coli in complex with neomycin. this file3 contains the 50s subunit of the second 70s ribosome, with4 neomycin bound. the entire crystal structure contains two5 70s ribosomes and is described in remark 400. 9 c2qba2_ 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the bacterial ribosome from2 escherichia coli in complex with gentamicin. this file3 contains the 50s subunit of the first 70s ribosome, with4 gentamicin bound. the entire crystal structure contains5 two 70s ribosomes and is described in remark 400. 10 c2qam2_ 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the bacterial ribosome from2 escherichia coli in complex with neomycin. this file3 contains the 50s subunit of the first 70s ribosome, with4 neomycin bound. the entire crystal structure contains two5 70s ribosomes and is described in remark 400. 11 c2z4n2_ 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the bacterial ribosome from escherichia2 coli in complex with paromomycin and ribosome recycling3 factor (rrf). this file contains the 50s subunit of the4 second 70s ribosome, with paromomycin and rrf bound. the5 entire crystal structure contains two 70s ribosomes and is6 described in remark 400. 12 c2z4l2_ 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the bacterial ribosome from escherichia2 coli in complex with paromomycin and ribosome recycling3 factor (rrf). this file contains the 50s subunit of the4 first 70s ribosome, with paromomycin and rrf bound. the5 entire crystal structure contains two 70s ribosomes and is6 described in remark 400. 13 c3i1n2_ 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the e. coli 70s ribosome in an2 intermediate state of ratcheting 14 c3e1dV_ 99.9 100 PDB header:ribosome Chain: V: PDB Molecule:50s ribosomal protein l34; PDBTitle: structure of the 50s subunit of e. coli ribosome in post-2 accommodation state 15 c2qbe2_ 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the bacterial ribosome from escherichia2 coli in complex with ribosome recycling factor (rrf). this3 file contains the 50s subunit of the first 70s ribosome,4 with rrf bound. the entire crystal structure contains two5 70s ribosomes and is described in remark 400. 16 c2qbg2_ 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the bacterial ribosome from escherichia2 coli in complex with ribosome recycling factor (rrf). this3 file contains the 50s subunit of the second 70s ribosome,4 with rrf bound. the entire crystal structure contains two5 70s ribosomes and is described in remark 400. 17 c2qp12_ 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the bacterial ribosome from escherichia2 coli in complex with spectinomycin and neomycin. this file3 contains the 50s subunit of the second 70s ribosome, with4 neomycin bound. the entire crystal structure contains two5 70s ribosomes. 18 c2qoz2_ 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the bacterial ribosome from escherichia2 coli in complex with spectinomycin and neomycin. this file3 contains the 50s subunit of the first 70s ribosome, with4 neomycin bound. the entire crystal structure contains two5 70s ribosomes. 19 c2qbi2_ 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the bacterial ribosome from escherichia2 coli in complex with gentamicin and ribosome recycling3 factor (rrf). this file contains the 50s subunit of the4 first 70s ribosome, with gentamicin and rrf bound. the5 entire crystal structure contains two 70s ribosomes and is6 described in remark 400. 20 c2qbk2_ 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the bacterial ribosome from escherichia2 coli in complex with gentamicin and ribosome recycling3 factor (rrf). this file contains the 50s subunit of the4 second 70s ribosome, with gentamicin and rrf bound. the5 entire crystal structure contains two 70s ribosomes and is6 described in remark 400. 21 c1vs62_ not modelled 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the bacterial ribosome from2 escherichia coli in complex with the antibiotic kasugamyin3 at 3.5a resolution. this file contains the 50s subunit of4 one 70s ribosome. the entire crystal structure contains5 two 70s ribosomes and is described in remark 400. 22 c2qox2_ not modelled 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the bacterial ribosome from escherichia2 coli in complex with spectinomycin. this file contains the3 50s subunit of the second 70s ribosome. the entire crystal4 structure contains two 70s ribosomes. 23 c2qov2_ not modelled 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the bacterial ribosome from escherichia2 coli in complex with spectinomycin. this file contains the3 50s subunit of the first 70s ribosome. the entire crystal4 structure contains two 70s ribosomes. 24 c3df42_ not modelled 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the bacterial ribosome from escherichia2 coli in complex with hygromycin b. this file contains the3 50s subunit of the second 70s ribosome. the entire crystal4 structure contains two 70s ribosomes. 25 c3df22_ not modelled 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the bacterial ribosome from escherichia2 coli in complex with hygromycin b. this file contains the3 50s subunit of the first 70s ribosome. the entire crystal4 structure contains two 70s ribosomes. 26 c2aw42_ not modelled 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the bacterial ribosome from2 escherichia coli at 3.5 a resolution. this file contains3 the 50s subunit of one 70s ribosome. the entire crystal4 structure contains two 70s ribosomes and is described in5 remark 400. 27 c3bbx2_ not modelled 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: the hsp15 protein fitted into the low resolution cryo-em map of the2 50s.nc-trna.hsp15 complex 28 c3e1bV_ not modelled 99.9 100 PDB header:ribosome Chain: V: PDB Molecule:50s ribosomal protein l34; PDBTitle: structure of the 50s subunit of e. coli ribosome in pre-2 accommodation state 29 c2vhm2_ not modelled 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDB Fragment:residues 2-142; PDBTitle: structure of pdf binding helix in complex with the ribosome2 (part 1 of 4) 30 c2vhn2_ not modelled 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDB Fragment:residues 2-142 PDBTitle: structure of pdf binding helix in complex with the ribosome.2 (part 2 of 4) 31 c3i1p2_ not modelled 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the e. coli 70s ribosome in an2 intermediate state of ratcheting 32 c3i1t2_ not modelled 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the e. coli 70s ribosome in an2 intermediate state of ratcheting 33 c2awb2_ not modelled 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the bacterial ribosome from2 escherichia coli at 3.5 a resolution. this file contains3 the 50s subunit of the second 70s ribosome. the entire4 crystal structure contains two 70s ribosomes and is5 described in remark 400. 34 c2j282_ not modelled 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: model of e. coli srp bound to 70s rncs 35 c2i2v2_ not modelled 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of ribosome with messenger rna and the2 anticodon stem-loop of p-site trna. this file contains the3 50s subunit of one 70s ribosome. the entire crystal4 structure contains two 70s ribosomes and is described in5 remark 400. 36 c2i2t2_ not modelled 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of ribosome with messenger rna and the2 anticodon stem-loop of p-site trna. this file contains the3 50s subunit of one 70s ribosome. the entire crystal4 structure contains two 70s ribosomes and is described in5 remark 400. 37 c2wwq6_ not modelled 99.9 100 PDB header:ribosome Chain: 6: PDB Molecule:50s ribosomal protein l34; PDBTitle: e.coli 70s ribosome stalled during translation of tnac2 leader peptide. this file contains the 50s, the p-site3 trna and the tnac leader peptide (part 2 of 2). 38 c3j012_ not modelled 99.9 100 PDB header:ribosome/ribosomal protein Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: structure of the ribosome-secye complex in the membrane environment 39 c3i222_ not modelled 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the e. coli 70s ribosome in an2 intermediate state of ratcheting 40 c2rdo2_ not modelled 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: 50s subunit with ef-g(gdpnp) and rrf bound 41 c1vs82_ not modelled 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the bacterial ribosome from escherichia coli in2 complex with the antibiotic kasugamyin at 3.5a resolution. this file3 contains the 50s subunit of one 70s ribosome. the entire crystal4 structure contains two 70s ribosomes and is described in remark 400. 42 c3fin7_ not modelled 99.9 64 PDB header:ribosome Chain: 7: PDB Molecule:50s ribosomal protein l34; PDBTitle: t. thermophilus 70s ribosome in complex with mrna, trnas2 and ef-tu.gdp.kirromycin ternary complex, fitted to a 6.43 a cryo-em map. this file contains the 50s subunit. 43 c1sm12_ not modelled 99.9 70 PDB header:ribosome/antibiotic Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: complex of the large ribosomal subunit from deinococcus radiodurans2 with quinupristin and dalfopristin 44 c3orb2_ not modelled 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the e. coli ribosome bound to cem-101. this file2 contains the 50s subunit of the first 70s ribosome bound to cem-101. 45 c3ofc2_ not modelled 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the e. coli ribosome bound to chloramphenicol.2 this file contains the 50s subunit of the first 70s ribosome with3 chloramphenicol bound. 46 c3ofz2_ not modelled 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the e. coli ribosome bound to clindamycin. this2 file contains the 50s subunit of the first 70s ribosome bound to3 clindamycin. 47 c3og02_ not modelled 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the e. coli ribosome bound to clindamycin. this2 file contains the 50s subunit of the second 70s ribosome. 48 c3ofd2_ not modelled 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the e. coli ribosome bound to chloramphenicol.2 this file contains the 50s subunit of the second 70s ribosome. 49 c1vt22_ not modelled 99.9 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the e. coli ribosome bound to cem-101. this file2 contains the 50s subunit of the second 70s ribosome. 50 c3ofr2_ not modelled 99.8 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the e. coli ribosome bound to erythromycin. this2 file contains the 50s subunit of the first 70s ribosome with3 erthromycin bound. 51 c3oat2_ not modelled 99.8 100 PDB header:ribosome/antibiotic Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the e. coli ribosome bound to telithromycin. this2 file contains the 50s subunit of the first 70s ribosome with3 telithromycin bound. 52 c3ofq2_ not modelled 99.8 100 PDB header:ribosome Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the e. coli ribosome bound to erythromycin. this2 file contains the 50s subunit of the second 70s ribosome. 53 c3oas2_ not modelled 99.8 100 PDB header:ribosome/antibiotic Chain: 2: PDB Molecule:50s ribosomal protein l34; PDBTitle: crystal structure of the e. coli ribosome bound to telithromycin. this2 file contains the 50s subunit of the second 70s ribosome. 54 c2ftcQ_ not modelled 99.7 47 PDB header:ribosome Chain: Q: PDB Molecule:39s ribosomal protein l34, mitochondrial; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 55 c3bbo4_ not modelled 98.8 57 PDB header:ribosome Chain: 4: PDB Molecule:ribosomal protein l34; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 56 c2x5aT_ not modelled 8.1 63 PDB header:viral protein Chain: T: PDB Molecule:orf15; PDBTitle: structure of the phage p2 baseplate in its activated2 conformation with ca (part 2 of 2)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0