Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	N	E	E	T	F	Y	Q	A	M	R	R	Q	G	V	T	R	R	S	F	L	K	Y	C	S	L	A	A	T	S	L	G	L	G	A	G	M	A	P	K	I	A	W	A	L	E	N	K	P	R	I	P	V	V	W	I	H	G	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?								?																		?	?	?	?	?	?	?									?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	C	T	C	C	T	E	S	F	I	R	S	A	H	P	L	A	K	D	V	I	L	S	L	I	S	L	D	Y	D	D	T	L	M	A	A	A	G	T	Q	A	E	E	V	F	E	D	I	I	T	Q	Y	N	G	K	Y	I	L	A	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	G	N	P	P	L	G	E	Q	G	M	F	C	I	S	S	G	R	P	F	I	E	K	L	K	R	A	A	A	G	A	S	A	I	I	A	W	G	T	C	A	S	W	G	C	V	Q	A	A	R	P	N	P	T	Q	A	T	P	I	D
Secondary structure
SS confidence
Disorder																																																				?			?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		K	V	I	T	D	K	P	I	I	K	V	P	G	C	P	P	I	P	D	V	M	S	A	I	I	T	Y	M	V	T	F	D	R	L	P	D	V	D	R	M	G	R	P	L	M	F	Y	G	Q	R	I	H	D	K	C	Y	R	R	A	H
Secondary structure
SS confidence
Disorder				?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		F	D	A	G	E	F	V	Q	S	W	D	D	D	A	A	R	K	G	Y	C	L	Y	K	M	G	C	K	G	P	T	T	Y	N	A	C	S	S	T	R	W	N	D	G	V	S	F	P	I	Q	S	G	H	G	C	L	G	C	A	E	N
Secondary structure
SS confidence
Disorder														?			?																												?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		G	F	W	D	R	G	S	F	Y	S	R	V	V	D	I	P	Q	M	G	T	H	S	T	A	D	T	V	G	L	T	A	L	G	V	V	A	A	A	V	G	V	H	A	V	A	S	A	V	D	Q	R	R	R	H	N	Q	Q	P	T	E
Secondary structure
SS confidence
Disorder					?										?	?	?	?	?	?	?	?	?	?																														?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.
Sequence		T	E	H	Q	P	G	N	E	D	K	Q	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3rgw chain S Region: 50 - 319 Aligned: 270 Modelled: 270 Confidence: 100.0% Identity: 76% PDB header:oxidoreductase/oxidoreductase Chain: S: PDB Molecule:membrane-bound hydrogenase (nife) small subunit hoxk; PDBTitle: crystal structure at 1.5 a resolution of an h2-reduced, o2-tolerant2 hydrogenase from ralstonia eutropha unmasks a novel iron-sulfur3 cluster Phyre2 PDB 3myr chain E Region: 49 - 316 Aligned: 267 Modelled: 268 Confidence: 100.0% Identity: 47% PDB header:oxidoreductase Chain: E: PDB Molecule:hydrogenase (nife) small subunit hyda; PDBTitle: crystal structure of [nife] hydrogenase from allochromatium vinosum in2 its ni-a state Phyre2 PDB 1wui chain S domain 1 Region: 46 - 311 Aligned: 264 Modelled: 266 Confidence: 100.0% Identity: 41% Fold: HydA/Nqo6-like Superfamily: HydA/Nqo6-like Family: Nickel-iron hydrogenase, small subunit Phyre2 PDB 1h2a chain S Region: 46 - 311 Aligned: 264 Modelled: 266 Confidence: 100.0% Identity: 41% PDB header:oxidoreductase Chain: S: PDB Molecule:hydrogenase; PDBTitle: single crystals of hydrogenase from desulfovibrio vulgaris Phyre2 PDB 1frf chain S Region: 49 - 311 Aligned: 259 Modelled: 263 Confidence: 100.0% Identity: 45% Fold: HydA/Nqo6-like Superfamily: HydA/Nqo6-like Family: Nickel-iron hydrogenase, small subunit Phyre2 PDB 1e3d chain A Region: 51 - 311 Aligned: 258 Modelled: 261 Confidence: 100.0% Identity: 42% Fold: HydA/Nqo6-like Superfamily: HydA/Nqo6-like Family: Nickel-iron hydrogenase, small subunit Phyre2 PDB 1yq9 chain A domain 1 Region: 49 - 311 Aligned: 258 Modelled: 263 Confidence: 100.0% Identity: 42% Fold: HydA/Nqo6-like Superfamily: HydA/Nqo6-like Family: Nickel-iron hydrogenase, small subunit Phyre2 PDB 1cc1 chain S Region: 50 - 311 Aligned: 256 Modelled: 262 Confidence: 100.0% Identity: 36% Fold: HydA/Nqo6-like Superfamily: HydA/Nqo6-like Family: Nickel-iron hydrogenase, small subunit Phyre2 PDB 2wpn chain A Region: 51 - 311 Aligned: 256 Modelled: 261 Confidence: 100.0% Identity: 34% PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [nifese] hydrogenase, small subunit; PDBTitle: structure of the oxidised, as-isolated nifese hydrogenase2 from d. vulgaris hildenborough Phyre2 PDB 2fug chain 6 domain 1 Region: 104 - 210 Aligned: 93 Modelled: 107 Confidence: 99.6% Identity: 23% Fold: HydA/Nqo6-like Superfamily: HydA/Nqo6-like Family: Nq06-like Phyre2 PDB 2g4r chain B Region: 71 - 211 Aligned: 124 Modelled: 141 Confidence: 89.6% Identity: 11% PDB header:biosynthetic protein Chain: B: PDB Molecule:molybdopterin biosynthesis mog protein; PDBTitle: anomalous substructure of moga Phyre2 PDB 2fts chain A domain 3 Region: 68 - 210 Aligned: 120 Modelled: 131 Confidence: 88.7% Identity: 17% Fold: Molybdenum cofactor biosynthesis proteins Superfamily: Molybdenum cofactor biosynthesis proteins Family: MoeA central domain-like Phyre2 PDB 2is8 chain A Region: 71 - 209 Aligned: 125 Modelled: 139 Confidence: 86.7% Identity: 12% PDB header:structural protein Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab; PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8 Phyre2 PDB 1y5e chain A domain 1 Region: 50 - 210 Aligned: 144 Modelled: 149 Confidence: 85.8% Identity: 7% Fold: Molybdenum cofactor biosynthesis proteins Superfamily: Molybdenum cofactor biosynthesis proteins Family: MogA-like Phyre2 PDB 1xi8 chain A domain 3 Region: 67 - 210 Aligned: 97 Modelled: 109 Confidence: 84.9% Identity: 7% Fold: Molybdenum cofactor biosynthesis proteins Superfamily: Molybdenum cofactor biosynthesis proteins Family: MoeA central domain-like Phyre2 PDB 2nqq chain A Region: 50 - 210 Aligned: 130 Modelled: 161 Confidence: 84.8% Identity: 12% PDB header:biosynthetic protein Chain: A: PDB Molecule:molybdopterin biosynthesis protein moea; PDBTitle: moea r137q Phyre2 PDB 2fu3 chain A Region: 50 - 210 Aligned: 134 Modelled: 161 Confidence: 84.6% Identity: 16% PDB header:biosynthetic protein/structural protein Chain: A: PDB Molecule:gephyrin; PDBTitle: crystal structure of gephyrin e-domain Phyre2 PDB 2pjk chain A Region: 69 - 210 Aligned: 128 Modelled: 130 Confidence: 83.2% Identity: 11% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:178aa long hypothetical molybdenum cofactor PDBTitle: structure of hypothetical molybdenum cofactor biosynthesis2 protein b from sulfolobus tokodaii Phyre2 PDB 2nqr chain A domain 3 Region: 68 - 210 Aligned: 116 Modelled: 143 Confidence: 82.1% Identity: 14% Fold: Molybdenum cofactor biosynthesis proteins Superfamily: Molybdenum cofactor biosynthesis proteins Family: MoeA central domain-like Phyre2 PDB 1jlj chain A Region: 71 - 211 Aligned: 111 Modelled: 117 Confidence: 81.4% Identity: 19% Fold: Molybdenum cofactor biosynthesis proteins Superfamily: Molybdenum cofactor biosynthesis proteins Family: MogA-like Phyre2 PDB 2e76 chain D Region: 16 - 53 Aligned: 38 Modelled: 38 Confidence: 80.0% Identity: 11% PDB header:photosynthesis Chain: D: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus Phyre2 PDB 2fyn chain O Region: 17 - 42 Aligned: 26 Modelled: 26 Confidence: 78.2% Identity: 42% PDB header:oxidoreductase Chain: O: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex Phyre2 PDB 1p84 chain E Region: 12 - 33 Aligned: 22 Modelled: 22 Confidence: 73.7% Identity: 18% PDB header:oxidoreductase Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur PDBTitle: hdbt inhibited yeast cytochrome bc1 complex Phyre2 1 c3rgwS_ 2 c3myrE_ 3 d1wuis1 4 c1h2aS_ 5 d1frfs_ 6 d1e3da_ 7 d1yq9a1 8 d1cc1s_ 9 c2wpnA_ 10 d2fug61 11 c2g4rB_ 12 d2ftsa3 13 c2is8A_ 14 d1y5ea1 15 d1xi8a3 16 c2nqqA_ 17 c2fu3A_ 18 c2pjkA_ 19 d2nqra3 20 d1jlja_ 21 c2e76D_ 22 c2fynO_ 23 24 c1p84E_ 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3rgwS_ 100.0 76 PDB header:oxidoreductase/oxidoreductase Chain: S: PDB Molecule:membrane-bound hydrogenase (nife) small subunit hoxk; PDBTitle: crystal structure at 1.5 a resolution of an h2-reduced, o2-tolerant2 hydrogenase from ralstonia eutropha unmasks a novel iron-sulfur3 cluster 2 c3myrE_ 100.0 47 PDB header:oxidoreductase Chain: E: PDB Molecule:hydrogenase (nife) small subunit hyda; PDBTitle: crystal structure of [nife] hydrogenase from allochromatium vinosum in2 its ni-a state 3 d1wuis1 100.0 41 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit 4 c1h2aS_ 100.0 41 PDB header:oxidoreductase Chain: S: PDB Molecule:hydrogenase; PDBTitle: single crystals of hydrogenase from desulfovibrio vulgaris 5 d1frfs_ 100.0 45 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit 6 d1e3da_ 100.0 42 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit 7 d1yq9a1 100.0 42 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit 8 d1cc1s_ 100.0 36 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nickel-iron hydrogenase, small subunit 9 c2wpnA_ 100.0 34 PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic [nifese] hydrogenase, small subunit; PDBTitle: structure of the oxidised, as-isolated nifese hydrogenase2 from d. vulgaris hildenborough 10 d2fug61 99.6 23 Fold:HydA/Nqo6-like Superfamily:HydA/Nqo6-like Family:Nq06-like 11 c2g4rB_ 89.6 11 PDB header:biosynthetic protein Chain: B: PDB Molecule:molybdopterin biosynthesis mog protein; PDBTitle: anomalous substructure of moga 12 d2ftsa3 88.7 17 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 13 c2is8A_ 86.7 12 PDB header:structural protein Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab; PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8 14 d1y5ea1 85.8 7 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 15 d1xi8a3 84.9 7 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 16 c2nqqA_ 84.8 12 PDB header:biosynthetic protein Chain: A: PDB Molecule:molybdopterin biosynthesis protein moea; PDBTitle: moea r137q 17 c2fu3A_ 84.6 16 PDB header:biosynthetic protein/structural protein Chain: A: PDB Molecule:gephyrin; PDBTitle: crystal structure of gephyrin e-domain 18 c2pjkA_ 83.2 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:178aa long hypothetical molybdenum cofactor PDBTitle: structure of hypothetical molybdenum cofactor biosynthesis2 protein b from sulfolobus tokodaii 19 d2nqra3 82.1 14 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 20 d1jlja_ 81.4 19 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 21 c2e76D_ 80.0 11 PDB header:photosynthesis Chain: D: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus 22 c2fynO_ 78.2 42 PDB header:oxidoreductase Chain: O: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex 23 c2pq4B_ not modelled 73.8 35 PDB header:chaperone/oxidoreductase Chain: B: PDB Molecule:periplasmic nitrate reductase precursor; PDBTitle: nmr solution structure of napd in complex with napa1-352 signal peptide 24 c1p84E_ 73.7 18 PDB header:oxidoreductase Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur PDBTitle: hdbt inhibited yeast cytochrome bc1 complex 25 d1wu2a3 not modelled 68.5 11 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 26 d1uuya_ not modelled 68.4 12 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 27 d1uz5a3 not modelled 65.1 16 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MoeA central domain-like 28 d1mkza_ not modelled 60.8 12 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 29 c3rfqC_ not modelled 60.1 9 PDB header:biosynthetic protein Chain: C: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase moab2; PDBTitle: crystal structure of pterin-4-alpha-carbinolamine dehydratase moab22 from mycobacterium marinum 30 c2wcvI_ not modelled 59.8 27 PDB header:isomerase Chain: I: PDB Molecule:l-fucose mutarotase; PDBTitle: crystal structure of bacterial fucu 31 c2fyuE_ not modelled 57.2 14 PDB header:oxidoreductase Chain: E: PDB Molecule:ubiquinol-cytochrome c reductase iron-sulfur subunit, PDBTitle: crystal structure of bovine heart mitochondrial bc1 with jg1442 inhibitor 32 d2h1qa1 not modelled 56.7 9 Fold:PLP-dependent transferase-like Superfamily:Dhaf3308-like Family:Dhaf3308-like 33 d1ogda_ not modelled 53.2 23 Fold:RbsD-like Superfamily:RbsD-like Family:RbsD-like 34 c1uz5A_ not modelled 52.7 14 PDB header:molybdopterin biosynthesis Chain: A: PDB Molecule:402aa long hypothetical molybdopterin PDBTitle: the crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikosii 35 c3e7nB_ not modelled 52.3 31 PDB header:transport protein Chain: B: PDB Molecule:d-ribose high-affinity transport system; PDBTitle: crystal structure of d-ribose high-affinity transport system from2 salmonella typhimurium lt2 36 d1ovma1 not modelled 52.1 26 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 37 c3mvkA_ not modelled 45.9 23 PDB header:isomerase Chain: A: PDB Molecule:protein fucu; PDBTitle: the crystal structure of fucu from bifidobacterium longum to 1.65a 38 d2ob5a1 not modelled 44.0 23 Fold:RbsD-like Superfamily:RbsD-like Family:RbsD-like 39 d1pvda1 not modelled 42.3 18 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 40 c2wcuB_ not modelled 41.9 27 PDB header:isomerase Chain: B: PDB Molecule:protein fucu homolog; PDBTitle: crystal structure of mammalian fucu 41 c3ilhA_ not modelled 40.0 14 PDB header:transcription regulator Chain: A: PDB Molecule:two component response regulator; PDBTitle: crystal structure of two component response regulator from cytophaga2 hutchinsonii 42 c3a52A_ not modelled 38.9 21 PDB header:hydrolase Chain: A: PDB Molecule:cold-active alkaline phosphatase; PDBTitle: crystal structure of cold-active alkailne phosphatase from2 psychrophile shewanella sp. 43 d2oa4a1 not modelled 35.6 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:TrpR-like Family:SPO1678-like 44 d1k7ha_ not modelled 34.0 29 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Alkaline phosphatase 45 d1whza_ not modelled 33.7 27 Fold:dsRBD-like Superfamily:YcfA/nrd intein domain Family:YcfA-like 46 d1y6va1 not modelled 33.6 25 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Alkaline phosphatase 47 d2f7wa1 not modelled 33.4 10 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 48 d2g2ca1 not modelled 33.4 12 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 49 d1vmea1 not modelled 32.8 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 50 c3e2dB_ not modelled 30.8 21 PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: the 1.4 a crystal structure of the large and cold-active2 vibrio sp. alkaline phosphatase 51 d1zpda1 not modelled 30.1 18 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 52 c2x98A_ not modelled 29.7 17 PDB header:hydrolase Chain: A: PDB Molecule:alkaline phosphatase; PDBTitle: h.salinarum alkaline phosphatase 53 c3fniA_ not modelled 29.1 11 PDB header:oxidoreductase Chain: A: PDB Molecule:putative diflavin flavoprotein a 3; PDBTitle: crystal structure of a diflavin flavoprotein a3 (all3895) from nostoc2 sp., northeast structural genomics consortium target nsr431a 54 d1ozha1 not modelled 28.6 18 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 55 c1ew2A_ not modelled 26.3 25 PDB header:hydrolase Chain: A: PDB Molecule:phosphatase; PDBTitle: crystal structure of a human phosphatase 56 d1zeda1 not modelled 26.3 25 Fold:Alkaline phosphatase-like Superfamily:Alkaline phosphatase-like Family:Alkaline phosphatase 57 d1xhja_ not modelled 26.2 14 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:NifU C-terminal domain-like 58 c2jnvA_ not modelled 25.4 22 PDB header:metal transport Chain: A: PDB Molecule:nifu-like protein 1, chloroplast; PDBTitle: solution structure of c-terminal domain of nifu-like2 protein from oryza sativa 59 c2iucB_ not modelled 24.9 8 PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: structure of alkaline phosphatase from the antarctic2 bacterium tab5 60 c2jrtA_ not modelled 24.5 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: nmr solution structure of the protein coded by gene2 rhos4_12090 of rhodobacter sphaeroides. northeast3 structural genomics target rhr5 61 d1ik6a2 not modelled 24.2 12 Fold:TK C-terminal domain-like Superfamily:TK C-terminal domain-like Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain 62 c1wu2B_ not modelled 23.9 19 PDB header:structural genomics,biosynthetic protein Chain: B: PDB Molecule:molybdopterin biosynthesis moea protein; PDBTitle: crystal structure of molybdopterin biosynthesis moea2 protein from pyrococcus horikoshii ot3 63 c3hbcA_ not modelled 22.4 12 PDB header:hydrolase Chain: A: PDB Molecule:choloylglycine hydrolase; PDBTitle: crystal structure of choloylglycine hydrolase from bacteroides2 thetaiotaomicron vpi 64 c3fq6A_ not modelled 22.3 16 PDB header:transferase Chain: A: PDB Molecule:methyltransferase; PDBTitle: the crystal structure of a methyltransferase domain from bacteroides2 thetaiotaomicron vpi 65 d1rlja_ not modelled 21.2 15 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavoprotein NrdI 66 d1ryda1 not modelled 19.7 14 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 67 d2djia1 not modelled 19.6 8 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 68 c3uhjE_ not modelled 19.2 15 PDB header:oxidoreductase Chain: E: PDB Molecule:probable glycerol dehydrogenase; PDBTitle: crystal structure of a probable glycerol dehydrogenase from2 sinorhizobium meliloti 1021 69 c2zwmA_ not modelled 18.7 17 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein yycf; PDBTitle: crystal structure of yycf receiver domain from bacillus2 subtilis 70 d2ez9a1 not modelled 18.6 16 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 71 c2oasA_ not modelled 18.2 23 PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coenzyme a transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coenzyme a transferase (atoa)2 in complex with coa from shewanella oneidensis, northeast structural3 genomics target sor119. 72 c3nhzA_ not modelled 18.1 17 PDB header:dna binding protein Chain: A: PDB Molecule:two component system transcriptional regulator mtra; PDBTitle: structure of n-terminal domain of mtra 73 c2kveA_ not modelled 17.1 67 PDB header:hormone Chain: A: PDB Molecule:mesencephalic astrocyte-derived neurotrophic factor; PDBTitle: c-terminal domain of mesencephalic astrocyte-derived neurotrophic2 factor (manf) 74 d1t9ba1 not modelled 17.0 22 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Pyruvate oxidase and decarboxylase, middle domain 75 d1zh2a1 not modelled 16.2 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 76 c3up8B_ not modelled 15.9 13 PDB header:oxidoreductase Chain: B: PDB Molecule:putative 2,5-diketo-d-gluconic acid reductase b; PDBTitle: crystal structure of a putative 2,5-diketo-d-gluconic acid reductase b 77 d1kgsa2 not modelled 15.8 14 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 78 d2f6ma1 not modelled 15.6 18 Fold:Long alpha-hairpin Superfamily:Endosomal sorting complex assembly domain Family:VPS23 C-terminal domain 79 c3p13B_ not modelled 15.6 19 PDB header:isomerase Chain: B: PDB Molecule:d-ribose pyranase; PDBTitle: complex structure of d-ribose pyranase sa240 with d-ribose 80 d1ys7a2 not modelled 15.5 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 81 d1ofcx1 not modelled 15.4 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Myb/SANT domain 82 c2qvgA_ not modelled 14.3 21 PDB header:transferase Chain: A: PDB Molecule:two component response regulator; PDBTitle: the crystal structure of a two-component response regulator2 from legionella pneumophila 83 d1uhua_ not modelled 13.7 18 Fold:Retroviral matrix proteins Superfamily:Retroviral matrix proteins Family:MMLV matrix protein-like 84 d1evsa_ not modelled 13.2 33 Fold:4-helical cytokines Superfamily:4-helical cytokines Family:Long-chain cytokines 85 c3eh7A_ not modelled 13.1 21 PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: the structure of a putative 4-hydroxybutyrate coa-transferase from2 porphyromonas gingivalis w83 86 d1peya_ not modelled 13.1 23 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 87 d1xhfa1 not modelled 12.9 15 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 88 c1ovmC_ not modelled 12.7 26 PDB header:lyase Chain: C: PDB Molecule:indole-3-pyruvate decarboxylase; PDBTitle: crystal structure of indolepyruvate decarboxylase from2 enterobacter cloacae 89 c2w0yB_ not modelled 12.7 12 PDB header:hydrolase Chain: B: PDB Molecule:alkaline phosphatase; PDBTitle: h.salinarum alkaline phosphatase 90 c3kcnA_ not modelled 12.6 18 PDB header:lyase Chain: A: PDB Molecule:adenylate cyclase homolog; PDBTitle: the crystal structure of adenylate cyclase from2 rhodopirellula baltica 91 c2r8bA_ not modelled 12.3 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu2452; PDBTitle: the crystal structure of the protein atu2452 of unknown function from2 agrobacterium tumefaciens str. c58 92 d1hn4a_ not modelled 12.3 16 Fold:Phospholipase A2, PLA2 Superfamily:Phospholipase A2, PLA2 Family:Vertebrate phospholipase A2 93 d1ycga1 not modelled 11.7 11 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:Flavodoxin-related 94 d1ny5a1 not modelled 11.6 16 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 95 c3d7rB_ not modelled 11.6 8 PDB header:hydrolase Chain: B: PDB Molecule:esterase; PDBTitle: crystal structure of a putative esterase from staphylococcus aureus 96 c3eq2A_ not modelled 11.6 20 PDB header:signaling protein Chain: A: PDB Molecule:probable two-component response regulator; PDBTitle: structure of hexagonal crystal form of pseudomonas2 aeruginosa rssb 97 d1veha_ not modelled 11.5 33 Fold:Alpha-lytic protease prodomain-like Superfamily:Fe-S cluster assembly (FSCA) domain-like Family:NifU C-terminal domain-like 98 d2r25b1 not modelled 11.4 13 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 99 c3luaA_ not modelled 11.2 11 PDB header:transcription regulator Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of a signal receiver domain of two component signal2 transduction (histidine kinase) from clostridium thermocellum

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0