Job Description P10443 Confidence 50.05% Date Thu Jan 5 11:32:19 GMT 2012 Rank 131 Aligned Residues 136 % Identity 19% Template c3ktsA_ PDB info PDB header:transcriptional regulator Chain: A: PDB Molecule:glycerol uptake operon antiterminator regulatory protein; PDBTitle: crystal structure of glycerol uptake operon antiterminator regulatory2 protein from listeria monocytogenes str. 4b f2365 Resolution 2.75 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		L	A	K	T	A	P	L	V	K	K	A	A	A	L	G	M	P	A	L	A	I	T	D	F	T	N	L	C	G	L	V	K	F	Y	G	A	G	H	G	A	G	I	K	P	I	V	G	A	D	F	N	V	Q	C	D	L	L	G	D	E	L	T	H	L	T	V	L	A	A	N	N	T	G	Y	Q	N	L	T	L	.
Query Conservation																																																																																	.
Alig confidence																									.																											.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation																									.																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	H	N	Q	K	D	M	E	K	I	L	E	L	D	L	T	Y	M	V	M	L	E	.	T	H	V	A	Q	L	K	A	L	V	K	Y	A	Q	A	G	G	K	K	V	L	L	H	A	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	V	N	G	L	K	N	D	D	Y	A	I	D	F	L	C	T	E
Template Known Secondary structure				S	S	S							T	T	S	S								S	.			T	T	T											T	T							G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.			T				S										T
Template Predicted Secondary structure																									.																											.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.														.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
								100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	L	I	S	K	A	Y	Q	R	G	Y	G	A	A	G	P	I	I	D	R	D	W	L	I	E	L	N	E	G	L	I	L	L	S	G	G	R	M	G	D	V	G	R	S	L	L	R	G	N	S	A	L	V	D	E	C	V	A	F	Y	E	E	H	F	P	D	R	Y	F	L	E	L	I	R	T
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.																									.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.																									.	.
Template Sequence		I	C	P	D	G	I	I	S	T	R	G	N	A	I	M	K	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	Q	H	K	M	L	A	I	.	.	.	.	.	.	.	.	.	Q	R	L	F	M	I	D	S	S	A	Y	N	K	G	V	A	L	I	Q	K	V	Q	P	D	.	.	C	I	E	L	L	P	G
Template Known Secondary structure		T			S					S								.	.	.	.	.	.	.	.	.	.	.	.	.				T	T					.	.	.	.	.	.	.	.	.							S																	S	.	.							T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.	.	.	.	.																									.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.														.	.	.	.	.	100	.	.	.										.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.			.	.	130	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	P	D	E	E	S	Y	L	H	A	A	V	E	L	A	E	A	R	G	L	P	V	V	A	T	N
Query Conservation
Alig confidence					.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.
Template Sequence		I	I	P	.	.	.	.	.	.	E	Q	V	Q	K	M	T	Q	K	L	H	I	P	V	I	A	G	G
Template Known Secondary structure		T			.	.	.	.	.	.																		S
Template Predicted Secondary structure					.	.	.	.	.	.
Template SS confidence
		135	.	.							.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions