Job Description P10443 Confidence 100.00% Date Thu Jan 5 11:32:19 GMT 2012 Rank 1 Aligned Residues 1084 % Identity 42% Template c3e0dA_ PDB info PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase iii subunit alpha; PDBTitle: insights into the replisome from the crystral structure of2 the ternary complex of the eubacterial dna polymerase iii3 alpha-subunit Resolution 4.60 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.			.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																							.	.																																								.	.
Query SS confidence																																							.	.																																								.	.
Query Sequence		M	S	E	P	R	F	V	H	L	R	V	H	S	D	Y	S	M	I	D	G	L	A	K	T	A	P	L	V	K	K	A	A	A	L	G	M	P	.	.	A	L	A	I	T	D	F	T	N	L	C	G	L	V	K	F	Y	G	A	G	H	G	A	G	I	K	P	I	V	G	A	D	F	N	V	Q	C	D	L	.	.
Query Conservation																																							.	.																																								.	.
Alig confidence				.	.	.																																	.	.																																								.	.
Template Conservation				.	.	.
Template Sequence		L	K	.	.	.	F	A	H	L	H	Q	H	T	Q	F	S	L	L	N	G	A	A	K	L	Q	D	L	L	K	W	V	K	E	T	T	P	E	D	P	A	L	A	M	T	D	H	G	N	L	F	G	A	V	E	F	Y	K	K	A	T	A	M	G	V	K	P	I	I	G	Y	E	A	Y	V	A	A	E	S	R	F
Template Known Secondary structure				.	.	.					S	B			T	T	S	T	T	T																		S	S									T			T	T										T	T	T													S	S		T	T
Template Predicted Secondary structure				.	.	.
Template SS confidence
		5	.				.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
				77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	L	G	D	E	L	T	H	L	T	V	L	A	A	N	N	T	G	Y	Q	N	L	T	L	L	I	S	K	A	Y	Q	R	G	Y	G	A	A	G	P	I	I	D	R	D	W	L	I	E	L	N	E	G	L	I	L	L	S	G	G	R	M	G	D	V	G	R	S	L	L	R	G	N	S	A	L	V	D	E	C
Query Conservation		.	.
Alig confidence		.	.																																		.
Template Conservation																																					.
Template Sequence		D	R	K	R	G	G	Y	F	H	L	T	L	L	A	K	D	F	T	G	Y	Q	N	L	V	R	L	A	S	R	A	Y	L	E	G	F	.	Y	E	K	P	R	I	D	R	E	I	L	R	E	H	A	Q	G	L	I	A	L	S	G	C	L	G	A	E	I	P	Q	F	I	L	Q	D	R	L	D	L	A	E	A	R
Template Known Secondary structure																	S																	T		B	.	S	S	S	B										T		T	T							S	T	T	B								T	T
Template Predicted Secondary structure																																					.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	F	Y	E	E	H	F	P	D	R	Y	F	L	E	L	I	R	T	G	R	P	D	E	E	S	Y	L	H	A	A	V	E	L	A	E	A	R	G	L	P	V	V	A	T	N	D	V	R	F	I	D	S	S	D	F	D	A	H	E	I	R	V	A	I	H	D	G	F	T	L	D	D	P	K	R	P	R	N	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	N	E	D	L	S	I	F	G	D	R	F	F	I	E	I	Q	N	H	G	L	P	E	Q	K	K	V	N	Q	V	L	K	E	F	A	R	K	Y	G	L	G	M	V	A	T	N	N	G	H	Y	V	R	K	E	D	A	R	A	H	E	V	L	L	A	I	Q	S	K	T	T	L	D	D	P	E	R	W	R	F	P
Template Known Secondary structure										G	G	G								S	S																		T	T									B	S	B	S	S	G	G	G												T	T			S	S		S	S					S
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.				.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.		.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.																													.					.
Query SS confidence																						.	.	.																													.					.
Query Sequence		S	P	Q	Q	Y	M	R	S	E	E	E	M	C	E	L	F	A	D	I	P	.	.	.	E	A	L	A	N	T	V	E	I	A	K	R	C	N	V	T	V	R	L	G	E	Y	F	L	P	Q	F	P	.	T	G	D	M	.	S	T	E	D	Y	L	V	K	R	A	K	E	G	L	E	E	R	L	A	F	L	F	P
Query Conservation																						.	.	.																													.					.
Alig confidence																						.	.	.																													.					.
Template Conservation
Template Sequence		C	D	E	F	Y	V	K	T	P	E	E	M	R	A	M	L	P	E	A	E	W	G	D	E	P	F	D	N	T	V	E	I	A	R	M	C	D	V	D	L	P	I	G	D	K	M	V	Y	R	I	P	R	F	P	L	G	R	T	E	A	Q	Y	L	R	E	L	T	F	L	G	L	L	R	R	Y	P	D	R	I	T
Template Known Secondary structure		S	S			B											S							S												T								T	T	S				B																											T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		310																														.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	E	R	L	K	R	R	P	E	Y	D	E	R	L	E	T	E	L	Q	V	I	N	Q	M	G	F	P	G	Y	F	L	I	V	M	E	F	I	Q	W	S	K	D	N	G	V	P	V	G	P
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	A	F	Y	R	E	V	L	R	L	L	D	E	R	A	L	A	E	A	L	A	R	V	E	E	K	A	W	E	E	L	R	K	R	E	W	T	A	E	A	I	L	H	R	A	L	Y	E	L	S	V	I	E	R	M	G	F	P	G	Y	F	L	I	V	Q	D	Y	I	N	W	A	R	G	H	G	V	S	V	G	P
Template Known Secondary structure										T	T																			T	T	T	T	T																							T																	T	T	T			B		S
Template Predicted Secondary structure
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	G	S	G	A	G	S	L	V	A	Y	A	L	K	I	T	D	L	D	P	L	E	F	D	L	L	F	E	R	F	L	N	P	E	R	V	S	M	P	D	F	D	V	D	F	C	M	E	K	R	D	Q	V	I	E	H	V	A	D	M	Y	G	R	D	A	V	S	Q	I	I	T	F	G	T	M	A	A	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	R	G	S	A	A	G	S	L	V	A	Y	A	V	G	I	T	N	I	D	P	L	R	F	G	L	L	F	E	R	F	L	N	P	E	R	V	S	M	P	D	I	D	T	D	F	S	D	R	E	R	D	R	V	I	Q	Y	V	R	E	R	Y	G	E	D	K	V	A	Q	I	G	T	F	G	S	L	A	S	K	A
Template Known Secondary structure				G	G	G	G	G							T	T	S			S		T	T	T	T	T							S		T	T	S												T	T	T														T	T	T
Template Predicted Secondary structure
Template SS confidence
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.			.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.
Query SS confidence																														.	.
Query Sequence		V	I	R	D	V	G	R	V	L	G	H	P	Y	G	F	V	D	R	I	S	K	L	I	P	P	D	P	G	.	.	M	T	L	A	K	A	F	E	A	E	P	Q	L	P	E	I	Y	E	A	D	E	E	V	K	A	L	I	D	M	A	R	K	L	E	G	V	T	R	N	A	G	K	H	A	G	G	V	V	I	A
Query Conservation																														.	.
Alig confidence																														.	.
Template Conservation
Template Sequence		A	L	K	D	V	A	R	V	Y	G	I	P	H	K	K	A	E	E	L	A	K	L	I	P	V	Q	F	G	K	P	K	P	L	Q	E	A	F	E	A	E	P	E	L	R	A	E	M	E	K	D	E	R	I	R	Q	V	I	E	V	A	M	R	L	E	G	L	N	R	H	A	S	V	H	A	A	G	V	V	I	A
Template Known Secondary structure										T	T											T	T	S		B	S	S	S	S	B			T	T	T	T	T	S	S		T	T	T	T	T																		S	T	T
Template Predicted Secondary structure
Template SS confidence
		503	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.
		519	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	T	K	I	T	D	F	A	P	L	Y	C	D	E	E	G	K	H	P	V	T	Q	F	D	K	S	D	V	E	Y	A	G	L	V	K	F	D	F	L	G	L	R	T	L	T	I	I	N	W	A	L	E	M	I	N	K	R	R	A	K	N	G	E	P	P	L	D	I	A	A	I	P	L	D	D	K	K	S	F	D
Query Conservation
Alig confidence																		.																																													.	.	.	.
Template Conservation																		.																																													.	.	.	.
Template Sequence		A	E	P	L	T	D	L	V	P	L	M	R	D	Q	E	G	.	R	P	V	T	Q	Y	D	M	G	A	V	E	A	L	G	L	L	K	M	D	F	L	G	L	R	T	L	T	F	L	D	E	A	R	R	I	V	K	E	S	K	G	V	E	.	.	.	.	L	D	Y	D	R	L	P	L	D	D	P	K	T	F	E
Template Known Secondary structure		S	S		G	G	G	T	S						T	T		.													T	T	T	B																													.	.	.	.			G	G	G			T	T
Template Predicted Secondary structure																		.																																													.	.	.	.
Template SS confidence
		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.		.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.					.	.	.	.	.	.	.	650	.	.	.	.	.	.	.
		599	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	Q	R	S	E	T	T	A	V	F	Q	L	E	S	R	G	M	K	D	L	I	K	R	L	Q	P	D	C	F	E	D	M	I	A	L	V	A	L	F	R	P	G	P	L	Q	S	G	M	V	D	N	F	I	D	R	K	H	G	R	E	E	I	S	Y	P	D	V	Q	W	Q	H	E	S	L	K	P	V	L	E
Query Conservation
Alig confidence																																																.	.
Template Conservation																																																.	.
Template Sequence		L	L	S	R	G	E	T	K	G	V	F	Q	L	E	S	G	G	M	T	A	T	V	R	G	L	K	P	R	R	L	E	D	I	I	A	L	V	S	L	Y	R	P	G	P	M	E	.	.	H	I	P	T	Y	I	R	R	H	H	G	Q	E	P	V	S	Y	A	E	F	P	H	A	E	K	Y	L	R	P	I	L	D
Template Known Secondary structure					T	T			T	T		T	T			S														S												S	T	T	G	G	G	.	.										T	T		S					T	T	S	T	T	T									G
Template Predicted Secondary structure																																																.	.
Template SS confidence
		658	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.			.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.
		679	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	T	Y	G	I	I	L	Y	Q	E	Q	V	M	Q	I	A	Q	V	L	S	G	Y	T	L	G	G	A	D	M	L	R	R	A	M	G	K	K	K	P	E	E	M	A	K	Q	R	S	V	F	A	E	G	A	E	K	N	G	I	N	A	E	L	A	M	K	I	F	D	L	V	E	K	F	A	G	Y	G	F	N	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	T	Y	G	I	P	V	Y	Q	E	Q	I	M	Q	I	A	S	Q	V	A	G	Y	S	L	G	E	A	D	L	L	R	R	A	M	G	K	K	R	V	E	E	M	Q	K	H	R	E	R	F	V	R	G	A	K	E	R	G	V	P	E	E	E	A	N	R	L	F	D	M	L	E	A	F	A	N	Y	G	F	N	K
Template Known Secondary structure		G	G	T	T				S												S																	T		T	T	T																S			S														T	T
Template Predicted Secondary structure
Template SS confidence
		736	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.
		759	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	H	S	A	A	Y	A	L	V	S	Y	Q	T	L	W	L	K	A	H	Y	P	A	E	F	M	A	A	V	M	T	A	D	M	D	N	T	E	K	V	V	G	L	V	D	E	C	W	R	M	G	L	K	I	L	P	P	D	I	N	S	G	L	Y	H	F	H	V	N	D	D	G	E	I	V	Y	G	I	G	A	I
Query Conservation
Alig confidence																																																																									.
Template Conservation																																																																									.
Template Sequence		S	H	A	A	A	Y	S	L	L	S	Y	Q	T	A	Y	V	K	A	H	Y	P	V	E	F	M	A	A	L	L	S	V	E	R	H	D	S	D	K	V	A	E	Y	I	R	D	A	R	A	L	G	I	P	V	L	P	P	D	V	N	R	S	G	F	D	F	K	V	V	G	E	E	.	I	L	F	G	L	S	A	V
Template Known Secondary structure																																	T	T	T														T	T	S								T	T	T			S	S					T	T		.					S	T	T	S
Template Predicted Secondary structure																																																																									.
Template SS confidence
		816	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.		.	.	.	890	.	.	.	.
		839	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	V	G	E	G	P	I	E	A	I	I	E	A	R	N	K	G	G	Y	F	R	E	L	F	D	L	C	A	R	T	D	T	K	K	L	N	R	R	V	L	E	K	L	I	M	S	G	A	F	D	R	L	G	P	H	R	A	A	L	M	N	S	L	G	D	A	L	K	A	A	D	Q	H	A	K	A	E	A	I
Query Conservation
Alig confidence																																																								.
Template Conservation																																																								.
Template Sequence		K	N	V	G	E	M	A	A	R	A	I	L	E	E	R	E	R	G	G	P	F	K	S	L	G	D	F	L	K	R	L	P	E	Q	V	V	N	K	R	A	L	E	S	L	V	K	A	G	A	L	D	A	F	G	.	D	R	A	R	L	L	A	S	L	E	P	L	L	R	W	A	A	E	T	R	E	R	G	R	S
Template Known Secondary structure		S	S																S		S			S								S		T	T	T	S												T	T	T	G	G	G	S	.																								T	T
Template Predicted Secondary structure																																																								.
Template SS confidence
		895	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.		.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.
		919	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980			.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.
Predicted Secondary structure																																																																.	.
Query SS confidence																																																																.	.
Query Sequence		G	Q	A	D	M	F	G	V	L	A	E	E	P	E	Q	I	E	Q	S	Y	A	S	C	Q	P	W	P	E	Q	V	V	L	D	G	E	R	E	T	L	G	L	Y	L	T	G	H	P	I	N	Q	Y	L	K	E	I	E	R	Y	V	G	G	V	.	.	R	L	K	D	M	H	P	T	E	R	G	K	V	I	T	A
Query Conservation																																																																.	.
Alig confidence									.	.	.	.	.	.																																																		.	.
Template Conservation									.	.	.	.	.	.
Template Sequence		G	L	V	G	L	F	A	.	.	.	.	.	.	E	V	E	E	P	P	L	V	E	A	S	P	L	D	E	I	T	M	L	R	Y	E	K	E	A	L	G	I	Y	V	S	G	H	P	V	L	R	Y	P	G	L	R	E	V	A	S	C	T	I	E	E	L	S	E	F	V	R	E	L	P	G	K	P	K	V	L	L
Template Known Secondary structure					S	S	S	S	.	.	.	.	.	.																											S	S			S			G	G	G	T								S				G	G	G						S	S	S	S	S	S
Template Predicted Secondary structure									.	.	.	.	.	.
Template SS confidence
		974	.	.	.	.	.	980							.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.
		997	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	L	V	V	A	A	R	V	M	V	T	K	R	G	N	R	I	G	I	C	T	L	D	D	R	S	G	R	L	E	V	M	L	F	T	D	A	L	D	K	Y	Q	Q	L	L	E	K	D	R	I	L	I	V	S	G	Q	V	S	F	D	D	F	S	G	G	L	K	M	T	A	R	E	V	M	D	I	D	E	A
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.
Template Sequence		S	G	M	V	E	.	.	.	.	.	.	.	.	.	.	.	.	E	V	R	F	T	L	S	D	E	T	G	A	L	E	V	V	K	E	.	.	.	.	.	.	.	.	.	.	.	.	.	D	I	P	L	L	V	L	A	E	V	E	.	.	.	.	.	.	.	.	R	V	L	A	Q	A	V	W	T	L	E	E	V
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.									T	T								T	.	.	.	.	.	.	.	.	.	.	.	.	.	T											.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.
Template SS confidence
		1048	.	1050	.	.													.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070														.	.	.	.	.	.	.	.	.	1080	.									.	.	.	.	.	.	.	.	1090	.	.	.	.
		1077	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	K	Y	A	R	G	L	A	I	S	L	T	D	R	Q	I	D	D	Q	L	L	N	R	L	R	Q	S	L	E	P	H	R	S	G	T	I	P	V	H	L	Y	Y	Q	R	A	D	A	R	A	R	L	R	F	G	A	T	W	R	V	S	P	S	D
Query Conservation
Alig confidence					.																.													.																						.
Template Conservation					.																.													.																						.
Template Sequence		L	E	A	.	P	K	A	L	E	V	E	V	D	H	A	L	L	D	E	.	K	G	A	R	L	K	S	L	L	D	E	H	.	P	G	S	L	P	V	Y	L	R	V	L	G	P	F	G	E	A	L	F	A	L	.	R	E	V	R	V	G	E	E	A
Template Known Secondary structure		T	T	S	.										S				T	T	.	T										T	S	.													S	S	S							.							S	T
Template Predicted Secondary structure					.																.													.																						.
Template SS confidence
		1125	.	.		.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.		.	.	.	.	.	.	.	1150	.	.	.	.		.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.		.	.	.	.	1180	.	.	.	.