Job Description P10443 Confidence 21.04% Date Thu Jan 5 11:32:19 GMT 2012 Rank 299 Aligned Residues 176 % Identity 13% Template c2zmeB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:vacuolar protein-sorting-associated protein 36; PDBTitle: integrated structural and functional model of the human escrt-ii2 complex Resolution 2.90 Å

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		688	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	V	M	Q	I	A	Q	V	L	S	G	Y	T	L	G	G	A	D	M	L	R	R	A	M	G	K	K	K	P	E	E	M	A	K	Q	R	S	V	F	A	E	G	A	E	K	N	G	I	N	A	E	L	A	M	K	I	F	D	L	V	E	K	F	A	G	Y	G	F	N	K	S	H	S	A	A	Y	A	L	V
Query Conservation
Alig confidence																.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	K	L	M	I	K	A	K	E	M	V	E	L	S	.	.	.	.	K	S	I	A	N	K	I	K	D	K	Q	G	D	I	T	E	D	E	T	I	R	F	K	S	Y	L	L	S	M	G	I	A	N	P	V	T	R	E	T	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	S	G	T	Q	Y	H	M	Q	L
Template Known Secondary structure																.	.	.	.						S								S			S												T	T					S	S		S	T	T		.	.	.	.	.	.	.	.	.	.	.	.		S
Template Predicted Secondary structure																.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.					.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.													.	.	.	240	.	.	.	.	.
		768	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.									.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.
Query SS confidence																																																		.	.	.	.	.	.	.	.
Query Sequence		S	Y	Q	T	L	W	L	K	A	H	Y	P	A	E	F	M	A	A	V	M	T	A	D	M	D	N	T	E	K	V	V	G	L	V	D	E	C	W	R	M	G	L	K	I	L	P	P	D	.	.	.	.	.	.	.	.	I	N	S	G	L	Y	H	F	H	V	N	D	D	G	E	I	V	Y	G	I	G	A	I	K
Query Conservation																																																		.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.
Template Sequence		A	K	Q	L	A	.	.	.	.	.	.	.	.	G	I	L	Q	V	P	L	E	E	R	G	G	I	M	S	L	T	E	V	Y	C	L	V	N	R	A	R	G	M	E	L	L	S	P	E	D	L	V	N	A	C	K	M	L	E	A	L	K	L	P	L	R	L	R	V	F	D	S	G	V	M	V	I	E	L	Q	S
Template Known Secondary structure							.	.	.	.	.	.	.	.									T	T	T	S																S	S	S													T	T	G	G	G	T		S							T	T								S	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.
Template SS confidence
		246	.	.	.	250									.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.		.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		G	V	G	E	G	P	I	E	A	I	I	E	A	R	N	K	G	G	Y	F	R	E	L	F	D	L	C	A	R	T	D	T	K	.	K	L	N	R	R	V	L	E	K	L	I	M	S	G	A	F
Query Conservation																																			.
Alig confidence																			.																.
Template Conservation																			.
Template Sequence		H	K	E	E	E	M	V	A	S	A	L	E	T	V	S	E	K	.	G	S	L	T	S	E	E	F	A	K	L	V	G	M	S	V	L	L	A	K	E	R	L	L	L	A	E	K	M	G	H	L
Template Known Secondary structure																			.	S		B										T																	T	S
Template Predicted Secondary structure																			.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.		.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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