Job Description P10443 Confidence 43.58% Date Thu Jan 5 11:32:19 GMT 2012 Rank 152 Aligned Residues 46 % Identity 28% Template c2zkqk_ PDB info PDB header:ribosomal protein/rna Chain: K: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Resolution 8.70 Å

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		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.																	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.				380	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Query Sequence		Y	F	L	I	V	M	E	F	I	Q	W	S	K	D	N	G	V	P	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	P	G	R	G	S	G	A	G	S	L	V	A	Y	A	L	K	I	T	D	L	.	.	.	D	P	L	E	F	D
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template Conservation
Template Sequence		A	M	L	A	A	Q	D	V	A	Q	R	C	K	E	L	G	I	T	A	L	H	I	K	L	R	A	T	G	G	N	R	T	K	T	P	G	P	G	A	Q	S	A	L	R	A	L	A	R	S	G	M	K	I	G	R	I	E	D	V	T	P	I	P	S	D
Template Known Secondary structure													T	T	T	T				B							S	S			B	T	T	B				T	T												T				S											S
Template Predicted Secondary structure
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions