Job Description P10443 Confidence 100.00% Date Thu Jan 5 11:32:19 GMT 2012 Rank 2 Aligned Residues 910 % Identity 100% Template c2hnhA_ PDB info PDB header:transferase Chain: A: PDB Molecule:dna polymerase iii alpha subunit; PDBTitle: crystal structure of the catalytic alpha subunit of e. coli2 replicative dna polymerase iii Resolution 2.30 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	E	P	R	F	V	H	L	R	V	H	S	D	Y	S	M	I	D	G	L	A	K	T	A	P	L	V	K	K	A	A	A	L	G	M	P	A	L	A	I	T	D	F	T	N	L	C	G	L	V	K	F	Y	G	A	G	H	G	A	G	I	K	P	I	V	G	A	D	F	N	V	Q	C	D	L	L	G	D	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	S	E	P	R	F	V	H	L	R	V	H	S	D	Y	S	M	I	D	G	L	A	K	T	A	P	L	V	K	K	A	A	A	L	G	M	P	A	L	A	I	T	D	F	T	N	L	C	G	L	V	K	F	Y	G	A	G	H	G	A	G	I	K	P	I	V	G	A	D	F	N	V	Q	C	D	L	L	G	D	E
Template Known Secondary structure												B			G	G	G	S	S	S			S												T	T		S							B	T			T	T												T														T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	H	L	T	V	L	A	A	N	N	T	G	Y	Q	N	L	T	L	L	I	S	K	A	Y	Q	R	G	Y	G	A	A	G	P	I	I	D	R	D	W	L	I	E	L	N	E	G	L	I	L	L	S	G	G	R	M	G	D	V	G	R	S	L	L	R	G	N	S	A	L	V	D	E	C	V	A	F	Y	E	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	H	L	T	V	L	A	A	N	N	T	G	Y	Q	N	L	T	L	L	I	S	K	A	Y	Q	R	G	Y	G	A	A	G	P	I	I	D	R	D	W	L	I	E	L	N	E	G	L	I	L	L	S	G	G	R	M	G	D	V	G	R	S	L	L	R	G	N	S	A	L	V	D	E	C	V	A	F	Y	E	E
Template Known Secondary structure											S																					T	T						T	T					S		T	T							G	G	G	S									T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		H	F	P	D	R	Y	F	L	E	L	I	R	T	G	R	P	D	E	E	S	Y	L	H	A	A	V	E	L	A	E	A	R	G	L	P	V	V	A	T	N	D	V	R	F	I	D	S	S	D	F	D	A	H	E	I	R	V	A	I	H	D	G	F	T	L	D	D	P	K	R	P	R	N	Y	S	P	Q	Q	Y	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	F	P	D	R	Y	F	L	E	L	I	R	T	G	R	P	D	E	E	S	Y	L	H	A	A	V	E	L	A	E	A	R	G	L	P	V	V	A	T	N	D	V	R	F	I	D	S	S	D	F	D	A	H	E	I	R	V	A	I	H	D	G	F	T	L	D	D	P	K	R	P	R	N	Y	S	P	Q	Q	Y	M
Template Known Secondary structure				T	T	S								S	S		T	T																T									B		B	S	S	G	G	G													T			T	T		T	T	S						T	T		B
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	E	E	E	M	C	E	L	F	A	D	I	P	E	A	L	A	N	T	V	E	I	A	K	R	C	N	V	T	V	R	L	G	E	Y	F	L	P	Q	F	P	T	G	D	M	S	T	E	D	Y	L	V	K	R	A	K	E	G	L	E	E	R	L	A	F	L	F	P	D	E	E	E	R	L	K	R	R	P	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	S	E	E	E	M	C	E	L	F	A	D	I	P	E	A	L	A	N	T	V	E	I	A	K	R	C	N	V	T	V	R	L	G	E	Y	F	L	P	Q	F	P	T	G	D	M	S	T	E	D	Y	L	V	K	R	A	K	E	G	L	E	E	R	L	A	F	L	F	P	D	E	E	E	R	L	K	R	R	P	E
Template Known Secondary structure											T	T	T																						S	S									T	T	S																								S								S
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	E	R	L	E	T	E	L	Q	V	I	N	Q	M	G	F	P	G	Y	F	L	I	V	M	E	F	I	Q	W	S	K	D	N	G	V	P	V	G	P	G	R	G	S	G	A	G	S	L	V	A	Y	A	L	K	I	T	D	L	D	P	L	E	F	D	L	L	F	E	R	F	L	N	P	E	R	V	S	M	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	D	E	R	L	E	T	E	L	Q	V	I	N	Q	M	G	F	P	G	Y	F	L	I	V	M	E	F	I	Q	W	S	K	D	N	G	V	P	V	G	P	G	R	G	S	G	A	G	S	L	V	A	Y	A	L	K	I	T	D	L	D	P	L	E	F	D	L	L	F	E	R	F	L	N	P	E	R	V	S	M	P
Template Known Secondary structure																T	T																		T	T			B		S			T	T	G	G	G							T	T	S	S		S		T	T	T	T	T			G	G	G	T	S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	D	V	D	F	C	M	E	K	R	D	Q	V	I	E	H	V	A	D	M	Y	G	R	D	A	V	S	Q	I	I	T	F	G	T	M	A	A	K	A	V	I	R	D	V	G	R	V	L	G	H	P	Y	G	F	V	D	R	I	S	K	L	I	P	P	D	P	G	M	T	L	A	K	A	F	E	A	E	P	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	F	D	V	D	F	C	M	E	K	R	D	Q	V	I	E	H	V	A	D	M	Y	G	R	D	A	V	S	Q	I	I	T	F	G	T	M	A	A	K	A	V	I	R	D	V	G	R	V	L	G	H	P	Y	G	F	V	D	R	I	S	K	L	I	P	P	D	P	G	M	T	L	A	K	A	F	E	A	E	P	Q
Template Known Secondary structure									G	G	G														G	G	G																							T	T											T	T	S				T	T											T
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	E	I	Y	E	A	D	E	E	V	K	A	L	I	D	M	A	R	K	L	E	G	V	T	R	N	A	G	K	H	A	G	G	V	V	I	A	P	T	K	I	T	D	F	A	P	L	Y	C	D	E	E	G	K	H	P	V	T	Q	F	D	K	S	D	V	E	Y	A	G	L	V	K	F	D	F	L	G	L	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	P	E	I	Y	E	A	D	E	E	V	K	A	L	I	D	M	A	R	K	L	E	G	V	T	R	N	A	G	K	H	A	G	G	V	V	I	A	P	T	K	I	T	D	F	A	P	L	Y	C	D	E	E	G	K	H	P	V	T	Q	F	D	K	S	D	V	E	Y	A	G	L	V	K	F	D	F	L	G	L	R
Template Known Secondary structure																							T	T							S	S								S	S		G	G	G	T							T	T	S		S				S	S								T	T
Template Predicted Secondary structure
Template SS confidence
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	T	I	I	N	W	A	L	E	M	I	N	K	R	R	A	K	N	G	E	P	P	L	D	I	A	A	I	P	L	D	D	K	K	S	F	D	M	L	Q	R	S	E	T	T	A	V	F	Q	L	E	S	R	G	M	K	D	L	I	K	R	L	Q	P	D	C	F	E	D	M	I	A	L	V	A	L	F	R	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	L	T	I	I	N	W	A	L	E	M	I	N	K	R	R	A	K	N	G	E	P	P	L	D	I	A	A	I	P	L	D	D	K	K	S	F	D	M	L	Q	R	S	E	T	T	A	V	F	Q	L	E	S	R	G	M	K	D	L	I	K	R	L	Q	P	D	C	F	E	D	M	I	A	L	V	A	L	F	R	P
Template Known Secondary structure																T	T	T	T	T	T						G	G	G			S											T	T			T	T	S	T	T			S														S											S	S
Template Predicted Secondary structure
Template SS confidence
		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640
		641	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720
Predicted Secondary structure
Query SS confidence
Query Sequence		G	P	L	Q	S	G	M	V	D	N	F	I	D	R	K	H	G	R	E	E	I	S	Y	P	D	V	Q	W	Q	H	E	S	L	K	P	V	L	E	P	T	Y	G	I	I	L	Y	Q	E	Q	V	M	Q	I	A	Q	V	L	S	G	Y	T	L	G	G	A	D	M	L	R	R	A	M	G	K	K	K	P	E	E	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	P	L	Q	S	G	M	V	D	N	F	I	D	R	K	H	G	R	E	E	I	S	Y	P	D	V	Q	W	Q	H	E	S	L	K	P	V	L	E	P	T	Y	G	I	I	L	Y	Q	E	Q	V	M	Q	I	A	Q	V	L	S	G	Y	T	L	G	G	A	D	M	L	R	R	A	M	G	K	K	K	P	E	E	M
Template Known Secondary structure					T	T	T										T	T	S	S				S	B		S	S	S	B		G	G	G					G	G	G	T	T				B
Template Predicted Secondary structure
Template SS confidence
		641	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720
		721	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	Q	R	S	V	F	A	E	G	A	E	K	N	G	I	N	A	E	L	A	M	K	I	F	D	L	V	E	K	F	A	G	Y	G	F	N	K	S	H	S	A	A	Y	A	L	V	S	Y	Q	T	L	W	L	K	A	H	Y	P	A	E	F	M	A	A	V	M	T	A	D	M	D	N	T	E	K	V	V	G	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	K	Q	R	S	V	F	A	E	G	A	E	K	N	G	I	N	A	E	L	A	M	K	I	F	D	L	V	E	K	F	A	G	Y	G	F	N	K	S	H	S	A	A	Y	A	L	V	S	Y	Q	T	L	W	L	K	A	H	Y	P	A	E	F	M	A	A	V	M	T	A	D	M	D	N	T	E	K	V	V	G	L
Template Known Secondary structure															T	T																		T	T		B																																		T	T	T
Template Predicted Secondary structure
Template SS confidence
		721	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800
		801	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	E	C	W	R	M	G	L	K	I	L	P	P	D	I	N	S	G	L	Y	H	F	H	V	N	D	D	G	E	I	V	Y	G	I	G	A	I	K	G	V	G	E	G	P	I	E	A	I	I	E	A	R	N	K	G	G	Y	F	R	E	L	F	D	L	C	A	R	T	D	T	K	K	L	N	R	R	V	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	D	E	C	W	R	M	G	L	K	I	L	P	P	D	I	N	S	G	L	Y	H	F	H	V	N	D	D	G	E	I	V	Y	G	I	G	A	I	K	G	V	G	E	G	P	I	E	A	I	I	E	A	R	N	K	G	G	Y	F	R	E	L	F	D	L	C	A	R	T	D	T	K	K	L	N	R	R	V	L	E
Template Known Secondary structure								T	T								T	T	T		B	S	S					T	T	S					B	G	G	G	S	T	T															T	T				S	S					T	T	S	S		S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		801	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880
		881	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	I	M	S	G	A	F	D	R	L	G	P	H	R	A	A	L	M	N	S	L	G	D	A	L	K	A	A	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	I	M	S	G	A	F	D	R	L	G	P	H	R	A	A	L	M	N	S	L	G	D	A	L	K	A	A	D
Template Known Secondary structure						T	T	T	T	T	T	T	S	S							T	T	S	S	S	S	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		881	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910