Job Description P09099 Confidence 82.69% Date Wed Jan 25 15:20:14 GMT 2012 Rank 139 Aligned Residues 64 % Identity 9% Template c3psfA_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt6; PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(236-1259) Resolution 2.59 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.						.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.
Query SS confidence									.	.	.	.	.
Query Sequence		Y	I	G	I	D	L	G	.	.	.	.	.	T	S	G	V	K	V	I	L	L	N	E	Q	G	E	V	V	A	A	Q	T	E	K	L	T	V	S	R	P	H	P	L	W	S	E	Q	D	P	E	Q	W	W	Q	A	T	D	R	A	M	K	A	L	G	D	Q	H	S	L	Q	D	V	K	A	L	G	I	A	G	Q
Query Conservation									.	.	.	.	.
Alig confidence									.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.																	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.																	.
Template Sequence		I	L	S	L	T	C	G	Q	G	R	F	G	A	D	A	I	I	A	V	Y	V	N	R	K	G	D	F	I	R	D	Y	K	I	V	D	N	P	F	D	K	T	N	P	.	.	.	.	.	.	.	.	.	.	E	K	F	E	D	T	L	D	N	I	I	Q	S	C	Q	P	.	N	A	I	G	I	N	G	P	N	P
Template Known Secondary structure								T	T			T	T	T	S									T	T	S										S		T	T		S	S			.	.	.	.	.	.	.	.	.	.																	.	S							S	S	T
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.																	.
Template SS confidence
		750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.											.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.		.	810	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions