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Job DescriptionP09099
Confidence100.00%DateWed Jan 25 15:20:14 GMT 2012
Rank12Aligned Residues475
% Identity24%Templatec2dpnB_
PDB info PDB header:transferaseChain: B: PDB Molecule:glycerol kinase; PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60..... ....70........
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Query Sequence  MYIGIDLGTSGVKVILLNEQGEVVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQHSL. . QDVKALGIAGQMH
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Template Sequence  FLLALDQGTTSSRAILFTLEGRPVAVAKREFRQLYPKPGWVEHDPLEIWETTLWAAREVLRRAGAEAGEVLALGITNQRE
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SS
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   3......10.........20.........30.........40.........50.........60.........70.........80..
 
   7980.... .....90.........100.........110.... .....120.........130.........140....... ..150.
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Query Sequence  GATLLD. AQQRVLRPAILWNDGRCAQECTLLEARVPQ. . SRVITGNLMMPGFTAPKLLWVQRHEPEIFRQID. . . . KVLL
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Template Sequence  TTLLWDRKTGKPLHNAIVWQDRRTTPLCEALRAKGLEPLFRERTGLLFDPYFSGTKLVWLLENVPGLKARAEGGGVAFGT
Template Known Secondary structure 
TTTTSS

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   83......90.........100.........110.........120.........130.........140.........150.........160..
 
   152.......160..... ....170.........180.........190.........200.........210.........220.........
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Query Sequence  PKDYLRLRMTGEFA. . SDMSDAAGTMWLDVAKRDWSDVMLQACDLSRDQMPALYEGSEITGALLPEVAKAWGMATVPVVA
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Template Sequence  VDTWLIWNLTGGKVHATDPTNASRTLLFNLHTLAWDPELLEALGIPAALLPEVRPSDGDFGETLPEL. . . LGA. PVPIRG
Template Known Secondary structure  TTTS


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   163......170.........180.........190.........200.........210.........220......... 230.. ......
 
   230.........240.........250.........260... ......270.........280.... .....290.........300......
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Query Sequence  GGGDNAAGAVGVGMVDANQAMLSLGTSGVYFAVS. EGFLSKPESAVHSFCHALPQR. . WHLMSVMLSAASCLDWAAKLTG
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Template Sequence  VLGDQQAALFGQAALGGGEGKCTYGTGAFLLLNTGKRPVLSEKGLLATVAWSLGGRATYALEGSLFVAGAAVGWLKEVGL
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   239240.........250.........260.........270.........280.........290.........300.........310........
 
   307..310.........320.........330.........340.........350.........360.........370.........380.. ...
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Query Sequence  LSNVPALIAAAQQADESAEPVWFLPYLSGERTPHNNPQAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDVVHA. CGI
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Template Sequence  IRESAEVEALAASVE. DTGDVYFVPAFTGLGAPYWDPYARGTLLGLTRGTSRAHLARAALEGVAFQVRDVVLAMEEEAGV
Template Known Secondary structure  SSSTTTGGG
S.S
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   319320.........330... ......340.........350.........360.........370.........380.........390.......
 
   386...390.........400.........410.........420.........430.........440.........450.........460.....
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Query Sequence  KPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLAQIAANPEKSLIELLPQLPLEQSHLPDAQRYAAY
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Template Sequence  RLKVLKADGGMAQNRLFLKIQADLLGVPVAVPEVTE. TTALGAALMAGVGAGALSPEDVA. GRFREAERFLPTMPEGR. R
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   398.400.........410.........420.........430... ......440.........450...... ...460.........470... .
 
   466...470.........480...
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Query Sequence  QPRRETFRRLYQQLLPLM
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Template Sequence  EALYRRWREAVERAKGWA
Template Known Secondary structure  TTTT
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   475....480.........490..
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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