Job Description P0AAH4 Confidence 100.00% Date Thu Jan 5 11:12:56 GMT 2012 Rank 44 Aligned Residues 229 % Identity 26% Template c3b5wE_ PDB info PDB header:membrane protein Chain: E: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of eschericia coli msba Resolution 5.30 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	I	R	N	L	T	I	E	F	K	T	G	D	E	W	V	K	A	V	D	R	V	S	M	T	L	T	E	G	E	I	R	G	L	V	G	E	S	G	S	G	K	S	L	I	A	K	A	I	C	G	V	N	K	D	N	W	R	V	T	A	D	R	M	R	F	D	D	I	D	L	L	R	L	S	A	R	E	R
Query Conservation
Alig confidence																			.	.																																						.	.	.	.
Template Conservation																			.	.																																						.	.	.	.
Template Sequence		V	E	F	R	N	V	T	F	T	Y	P	G	R	D	V	P	A	.	.	L	R	N	I	N	L	K	I	P	A	G	K	T	V	A	L	V	G	R	S	G	S	G	K	S	T	I	A	S	L	I	T	R	F	Y	D	I	.	.	.	.	D	E	G	E	I	L	M	D	G	H	D	L	R	E	Y	T	L	A	S	L
Template Known Secondary structure					S	S		B		B		S	S	S	S		B	S	.	.	S		S							T	T							S	S	T	T	S	S								T	T	T		S			.	.	.	.	B	S	S					S	S	S	B	T	T	T	S
Template Predicted Secondary structure																			.	.																																						.	.	.	.
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.			.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.					.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.									.	150	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.	.	.
Query Sequence		R	K	L	V	G	H	N	V	S	M	I	F	Q	E	P	Q	S	C	L	D	P	S	E	R	V	G	R	Q	L	M	Q	N	I	P	A	W	T	Y	K	G	R	W	W	Q	R	F	G	W	R	K	R	R	A	I	E	L	L	H	R	V	G	I	K	D	H	.	.	.	.	.	.	.	.	K	D	A	M	R	S	F
Query Conservation																																																																			.	.	.	.	.	.	.	.
Alig confidence			.	.	.	.											.	.	.													.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.											.	.	.													.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	.	.	.	.	N	Q	V	A	L	V	S	Q	N	V	.	.	.	H	L	F	N	D	T	V	A	N	N	I	A	.	.	.	.	.	.	.	.	.	.	.	Y	A	R	T	E	Q	Y	S	R	E	Q	I	E	E	A	A	R	M	A	Y	A	M	D	F	I	N	K	M	D	N	G	L	D	T	V	I	G	E	N
Template Known Secondary structure			.	.	.	.	T	T						S			.	.	.				S	S		B	S	T	T	T	T	.	.	.	.	.	.	.	.	.	.	.	S	S	S	S	T	T	S			T	T					T	T	T	T	S	T					T	T	S	S	S	S	S	B					T	T
Template Predicted Secondary structure			.	.	.	.											.	.	.													.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		416					.	.	.	420	.	.	.	.	.	.				.	.	.	430	.	.	.	.	.	.	.	.												.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Y	E	L	T	E	G	E	C	Q	K	V	M	I	A	I	A	L	A	N	Q	P	R	L	L	I	A	D	E	P	T	N	S	M	E	P	T	T	Q	A	Q	I	F	R	L	L	T	R	L	N	Q	N	S	N	T	T	I	L	L	I	S	H	D	L	Q	M	L	S	Q	W	A	D	K	I	N	V	L	Y	C	G
Query Conservation
Alig confidence																																																					.	.																	.
Template Conservation																																																					.	.																	.
Template Sequence		G	V	L	L	S	G	G	Q	R	Q	R	I	A	I	A	R	A	L	L	R	D	S	P	I	L	I	L	D	E	A	T	S	A	L	D	T	E	S	E	R	A	I	Q	A	A	L	D	E	L	Q	K	.	.	N	R	T	S	L	V	I	A	H	R	L	S	T	I	E	K	.	A	D	E	I	V	V	V	E	D	G
Template Known Secondary structure		S		S	S										T					T	S			S							T	T	S	S									T	T					T	T	T	S	.	.	S	S							S	S	G	G	G	T	T	T	.		S	S	B					T	T
Template Predicted Secondary structure																																																					.	.																	.
Template SS confidence
		478	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.			.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.		.	.	.	.	.	550	.	.	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	V	E	T	A	P	S	K	E	L	V	T	M	P	H	H	P	Y	T	Q	A	L	I	R	A
Query Conservation
Alig confidence															.	.
Template Conservation															.	.
Template Sequence		V	I	V	E	R	G	T	H	N	D	L	L	E	.	.	H	R	G	V	Y	A	Q	L	H	K	M
Template Known Secondary structure								S	S	S					.	.	S		S	S						T	T
Template Predicted Secondary structure															.	.
Template SS confidence
		555	.	.	.	.	560	.	.	.	.	.	.	.			.	.	570	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions