Job Description P0AAH4 Confidence 98.04% Date Thu Jan 5 11:12:56 GMT 2012 Rank 93 Aligned Residues 138 % Identity 20% Template c2o8bA_ PDB info PDB header:dna binding protein/dna Chain: A: PDB Molecule:dna mismatch repair protein msh2; PDBTitle: human mutsalpha (msh2/msh6) bound to adp and a g t mispair Resolution 2.75 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.									.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.
Query Sequence		D	R	V	S	M	T	L	T	E	G	E	I	R	G	L	V	G	E	S	G	S	G	K	S	L	I	A	K	A	I	C	.	.	.	.	.	.	.	.	G	V	N	K	D	N	W	R	V	T	A	D	R	M	R	F	D	D	I	D	L	L	R	L	S	A	R	E	R	R	K	L	V	G	H	N	V	S	M	I	F
Query Conservation																																	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.	.	.	.	.	.							.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	D	V	Y	F	E	K	D	K	Q	M	F	H	I	I	T	G	P	N	M	G	G	K	S	T	Y	I	R	Q	T	G	V	I	V	L	M	A	Q	I	G	C	F	V	P	C	.	.	.	E	S	A	E	V	S	I	V	D	C	I	L	A	R	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								T	T	S	S								S	T	T	S	S																	T	T			B	S	S	.	.	.	S								S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																															.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		653	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.				.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	P	Q	S	C	L	D	P	S	E	R	V	G	R	Q	L	M	Q	N	I	P	A	W	T	Y	K	G	R	W	W	Q	R	F	G	W	R	K	R	R	A	I	E	L	L	H	R	V	G	I	K	D	H	K	D	A	M	R	S	F	P	Y	E	L	T	E	G	E	C	Q	K	V	M	I	A	I	A	L	A	N
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	F	M	A	.	.	.	.	.	.	.	.	.	E	M	L	E	T	A	S	I	L	R	S	A	T
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.										T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.	.	.	.
Template SS confidence
																																																							723	.	.	.	.										.	.	730	.	.	.	.	.	.	.	.	.	740
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.		.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.			.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																									.																				.	.
Query SS confidence																									.																				.	.
Query Sequence		Q	P	R	L	L	I	A	D	E	P	T	N	S	M	E	P	T	T	Q	A	Q	I	F	.	R	L	L	T	R	L	N	Q	N	S	N	T	T	I	L	L	I	S	H	.	.	D	L	Q	M	L	S	Q	W	A	D	K	I	N	V	L	Y	C	G	Q	T	V	E	T	A	P
Query Conservation																									.																				.	.
Alig confidence																									.																				.	.
Template Conservation
Template Sequence		K	D	S	L	I	I	I	D	E	L	G	R	G	T	S	T	Y	D	G	F	G	L	A	W	A	I	S	E	Y	I	A	T	K	I	G	A	F	C	M	F	A	T	H	F	H	E	L	T	A	L	A	N	Q	I	P	T	V	N	N	L	H	V	T	A	L	T	T	E	E	T
Template Known Secondary structure		T	T	S						S				S	S																			T	T											T	T	S	T	T					S	S	S												S	S
Template Predicted Secondary structure
Template SS confidence
		741	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions