Return to main results Retrieve Phyre Job Id

Job DescriptionP0A9P6
Confidence100.00%DateThu Jan 5 11:10:55 GMT 2012
Rank52Aligned Residues204
% Identity35%Templatec3ly5A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:atp-dependent rna helicase ddx18; PDBTitle: ddx18 dead-domain
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10. ........20.........30.........40.........50.........60........ .70........
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Query Sequence  ETTFADL. . GLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNL. . . . DPELKAPQIL
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Template Sequence  TGAFEDTSFLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVL
Template Known Secondary structure 

BSGGG




TT

B

T





TTS
TT

GGG


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   171........180.........190.........200.........210.........220.........230.........240.........250
 
   7980.........90.........100.........110.........120.........130.........140. ........150.......
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Query Sequence  VLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLK. RGTLDLSKLSGLVLDE
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Template Sequence  ILSPTRELAMQTFGVLKELMTHH. VHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDE
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SSTTT
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S

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   256...260.........270........ .280.........290.........300.........310.........320.........330....
 
   158.160.........170.........180.........190.........200.........
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Query Sequence  ADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVR
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Template Sequence  ADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPLYV
Template Known Secondary structure  TT
S
SSS
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   335....340.........350.........360.........370.........380......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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