Job Description P0A9P6 Confidence 100.00% Date Thu Jan 5 11:10:55 GMT 2012 Rank 18 Aligned Residues 339 % Identity 19% Template c3l9oA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome Resolution 3.39 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	Y	E	K	P	S	P	I	Q	A	E	C	I	P	H	L	L	N	G	R	D	V	L	G	M	A	Q	T	G	S	G	K	T	A	A	F	S	L	P	L	L	Q	N	L	D	P	E	L	K	A	P	Q	I	L	V	L	A	P	T	R	E	L	A	V	Q	V	A	E	A	M	T	D	F	S	K	H	M	R	G
Query Conservation
Alig confidence						.																																											.	.	.																									.	.	.	.	.
Template Conservation						.																																											.	.	.																									.	.	.	.	.
Template Sequence		Y	P	F	T	.	L	D	P	F	Q	D	T	A	I	S	C	I	D	R	G	E	S	V	L	V	S	A	H	T	S	A	G	K	T	V	V	A	E	Y	A	I	A	Q	S	L	K	N	.	.	.	K	Q	R	V	I	Y	T	S	P	I	K	A	L	S	N	Q	K	Y	R	E	L	L	A	E	.	.	.	.	.	F
Template Known Secondary structure			S	S		.													T	T	T									S	S	S																T	.	.	.	T								S	S															.	.	.	.	.	T
Template Predicted Secondary structure						.																																											.	.	.																									.	.	.	.	.
Template SS confidence
		146	.	.	.		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.				.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.						.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	V	V	A	L	Y	G	G	Q	R	Y	D	V	Q	L	R	A	L	R	Q	G	P	Q	I	V	V	G	T	P	G	R	L	L	D	H	L	K	R	G	T	L	D	L	S	K	L	S	G	L	V	L	D	E	A	D	E	M	L	R	M	G	F	I	E	D	V	E	T	I	M	A	Q	I	P	E	G	H	Q	T
Query Conservation
Alig confidence													.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.
Template Sequence		G	D	V	G	L	M	T	G	D	I	T	.	.	.	.	.	.	.	I	N	P	D	A	G	C	L	V	M	T	T	E	I	L	R	S	M	L	Y	R	G	S	E	V	M	R	E	V	A	W	V	I	F	D	E	V	H	Y	M	R	D	K	E	R	G	V	V	W	E	E	T	I	I	L	L	P	D	K	V	R	Y
Template Known Secondary structure		S	S						S	S		B	.	.	.	.	.	.	.				S		S																	S	S												T	G	G	G	T	T	S														S		T	T	S
Template Predicted Secondary structure													.	.	.	.	.	.	.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.								.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		184	.	.	.	.	.	190	.			.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.																									.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure										.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	F	S	A	T	M	P	.	.	E	A	I	R	R	I	T	R	R	F	M	K	E	P	Q	E	V	R	I	Q	S	S	V	T	T	R	P	D	I	S	Q	S	Y	W	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	W	G	M	R	K	N	E	A	L	V
Query Conservation										.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	F	L	S	A	T	I	P	N	A	M	E	F	A	E	W	I	C	K	I	H	S	Q	P	C	H	I	V	Y	T	N	F	R	P	T	P	L	Q	H	Y	L	F	P	A	H	G	D	G	I	Y	L	V	V	D	E	K	S	T	F	R	E	E	N	F	Q	K	A	M	A	S	I	A	K	G	D	I	Y	K	I	V
Template Known Secondary structure							S		S	S												T		S											S	S									T	T	S	S								T	T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.																																				.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	F	L	E	A	E	D	F	D	A	A	I	I	F	V	R	T	K	N	A	T	L	E	V	A	E	A	L	E	R	N	G	Y	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	A	L	N	G	D	M	N	Q	A
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	M	I	W	K	K	K	Y	N	P	V	I	V	F	S	F	S	K	R	D	C	E	E	L	A	L	K	M	S	K	L	D	F	N	S	D	A	L	T	K	I	F	N	N	A	I	A	L	L	P	E	T	D	R	E	L	P	Q	I	K	H	I	L	P	L	L	R	R	G	I	G	I	H	H	S	G	L	L	P	I
Template Known Secondary structure							T	T									S												T		S												G	G	G	S		T						T	T									T						T						S		S
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.										.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340			.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.																			.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.																			.	.
Query Sequence		L	R	E	Q	T	L	E	R	L	K	D	G	R	L	D	I	L	I	A	T	D	V	A	A	R	G	L	D	V	E	R	I	S	L	V	V	N	Y	D	I	.	.	.	.	.	.	.	.	.	P	M	D	S	E	S	Y	V	H	R	I	G	R	T	G	R	A	G	.	.	R	A	G	R	A	L	L	F	V	E	N
Query Conservation																																										.	.	.	.	.	.	.	.	.																			.	.
Alig confidence																																.	.	.								.	.	.	.	.	.	.	.	.																			.	.
Template Conservation																																.	.	.
Template Sequence		L	K	E	V	I	E	I	L	F	Q	E	G	F	L	K	V	L	F	A	T	E	T	F	S	I	G	L	N	M	K	.	.	.	T	V	V	F	T	S	V	R	K	W	D	G	Q	Q	F	R	W	V	S	G	G	E	Y	I	Q	M	S	G	R	A	G	R	R	G	L	D	D	R	G	I	V	I	M	M	I	D	E
Template Known Secondary structure													T									S				S						.	.	.					S		S				S	S	S																	S			S	S	S		S	S
Template Predicted Secondary structure																																.	.	.
Template SS confidence
		483	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.				.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.
		352		.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		R	.	E	R	R	L	L	R	N	I	E	R	T	M	K	L	T	I	P	E	V	E	L	P	N	A	E	L	L	G	K
Query Conservation			.
Alig confidence			.
Template Conservation
Template Sequence		K	M	E	P	Q	V	A	K	G	M	V	K	G	Q	A	D	R	L	D	S	A	F	H	L	G	Y	N	M	I	L	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		562	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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