Job Description P0A9P6 Confidence 91.38% Date Thu Jan 5 11:10:55 GMT 2012 Rank 258 Aligned Residues 66 % Identity 17% Template c2zamA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:vacuolar protein sorting-associating protein 4b; PDBTitle: crystal structure of mouse skd1/vps4b apo-form Resolution 3.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.											.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.
Query Sequence		M	A	E	F	E	T	T	F	A	D	L	G	L	K	A	P	I	L	E	A	L	N	D	L	G	Y	E	K	P	S	P	I	Q	A	E	C	I	P	H	L	L	N	.	.	.	.	.	.	.	.	.	.	G	R	D	V	L	G	M	A	Q	T	G	S	G	K	T	A	A	F	S	L	P	L	L	Q	N	L	D	P
Query Conservation																																												.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.
Template Sequence		I	E	R	P	N	V	K	W	S	D	V	A	G	L	E	G	A	K	E	A	.	.	.	.	.	.	.	.	.	.	.	L	K	E	A	V	I	L	P	I	K	F	P	H	L	F	T	G	K	R	T	P	W	R	G	I	L	L	F	G	P	P	G	T	G	K	S	Y	.	.	.	.	.	L	A	K	A	V	A	T
Template Known Secondary structure									G	G	G	S		S								.	.	.	.	.	.	.	.	.	.	.					T							G	G	G	S		S	S					S							S	T	T	S					.	.	.	.	.
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.												.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.						.	.	.	.	.	.	.
		71	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	K	A	P	Q	I	L	V	L	A	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	A	N	N	S	T	F	F	S	I	S	S
Template Known Secondary structure			T	T	T
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions