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Job DescriptionP0A9P6
Confidence98.66%DateThu Jan 5 11:10:55 GMT 2012
Rank136Aligned Residues127
% Identity24%Templatec2xzlA_
PDB info PDB header:hydrolase/rnaChain: A: PDB Molecule:atp-dependent helicase nam7; PDBTitle: upf1-rna complex
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   25....30.........40.........50.........60.........70.........80.........90.........100....
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Query Sequence  GYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGV
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Template Sequence  NFAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDR. . ILVCAPSNVAVDHLAAKLRDL. . . . . GL
Template Known Secondary structure  TS



TT
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   405....410.........420.........430.........440.........450.... .....460.........470..... ..
 
   105....110.... .....120.........130.....
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Query Sequence  NVVALYGGQR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . YDVQLRALRQGPQIVVGTPGR
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Template Sequence  KVVRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNK. ADVVCCTCVG
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GGGTTS

TTGGGBTT

TS


T.
STTG
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   478.480.........490.........500.........510.........520.........530.........540...... ...550......
 
   136...140.........150.........160....
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Query Sequence  LLDHLKRGTLDLSKLSGLVLDEADEMLRM
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Template Sequence  AGDKRLDT. . . . . KFRTVLIDESTQASEP
Template Known Secondary structure  GG
TT

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STTGGGS
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   557..560.... .....570.........580
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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