Job Description P0A9P6 Confidence 100.00% Date Thu Jan 5 11:10:55 GMT 2012 Rank 41 Aligned Residues 272 % Identity 18% Template c2vbcA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:dengue 4 ns3 full-length protein; PDBTitle: crystal structure of the ns3 protease-helicase from dengue2 virus Resolution 3.15 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	R	D	V	L	G	M	A	Q	T	G	S	G	K	T	A	A	F	S	L	P	L	L	Q	N	L	D	P	E	L	K	A	P	Q	I	L	V	L	A	P	T	R	E	L	A	V	Q	V	A	E	A	M	T	D	F	S	K	H	M	R	G	V	N	V	V	A	L	Y	G	G	Q	R	Y	D	V	Q	L	R	A
Query Conservation
Alig confidence																																			.	.																						.	.	.															.	.	.	.	.	.	.
Template Conservation																																			.	.																						.	.	.															.	.	.	.	.	.	.
Template Sequence		K	K	R	L	T	I	M	D	L	H	P	G	A	G	K	T	K	R	I	L	P	S	I	V	R	E	A	L	K	R	R	L	R	.	.	T	L	I	L	A	P	T	R	V	V	A	A	E	M	E	E	A	L	R	G	L	.	.	.	P	I	R	Y	Q	T	P	A	V	K	S	D	H	T	.	.	.	.	.	.	.
Template Known Secondary structure		T	T									T	T	T			T	T	T												T	T			.	.						S	S											T	T	T	S	.	.	.							T	T		S					.	.	.	.	.	.	.
Template Predicted Secondary structure																																			.	.																						.	.	.															.	.	.	.	.	.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.			.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.				.	240	.	.	.	.	.	.	.	.	.	250	.	.
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	Q	G	P	Q	I	V	V	G	T	P	G	R	L	L	D	H	L	K	R	G	T	L	D	L	S	K	L	S	G	L	V	L	D	E	A	D	E	M	L	R	M	G	F	I	E	D	V	E	T	I	M	A	Q	I	P	E	G	H	Q	T	A	L	F	S	A	T	M	P	E	A	I	R	R	I	T	R	R	F
Query Conservation
Alig confidence		.	.																						.
Template Conservation		.	.																						.
Template Sequence		.	.	G	R	E	I	V	D	L	M	C	H	A	T	F	T	T	R	L	L	S	S	T	.	R	V	P	N	Y	N	L	I	V	M	D	E	A	H	F	T	D	P	C	S	V	A	A	R	G	Y	I	S	T	R	V	E	M	G	E	A	A	A	I	F	M	T	A	T	P	P	G	S	T	D	P	F	P	Q	S	N
Template Known Secondary structure		.	.		S	S																		S	.						S						S	T	T			S																	T	S								S	S		T	T				S	S				S
Template Predicted Secondary structure		.	.																						.
Template SS confidence
				253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.		.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	E	P	Q	E	V	R	I	Q	S	S	V	T	T	R	P	D	I	S	Q	S	Y	W	T	V	W	G	M	R	K	N	E	A	L	V	R	F	L	E	A	E	D	F	D	A	A	I	I	F	V	R	T	K	N	A	T	L	E	V	A	E	A	L	E	R	N	G	Y	N	S	A	A	L	N	G	D	M	N	Q
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.
Template Sequence		S	P	I	E	D	I	E	R	E	I	P	E	R	S	W	N	T	G	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	W	I	T	D	Y	Q	G	K	T	V	W	F	V	P	S	I	K	A	G	N	D	I	A	N	C	L	R	K	S	G	K	R	V	I	Q	L	S	R	K	T	.	.
Template Known Secondary structure		S											S	S				S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S							S	S													T	T	T								T	T	T	.	.
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.																			.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.																					.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	R	E	Q	T	L	E	R	L	K	D	G	R	L	D	I	L	I	A	T	D	V	A	A	R	G	L	D	V	E	R	I	S	L	V	V	N	Y	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	P	M	D	S	E	S	Y	V	H	R	I	G	R	T	G	R	A	G	R
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																														.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.																														.
Template Sequence		.	.	F	D	T	E	Y	P	K	T	K	L	T	D	W	D	F	V	V	T	T	D	I	S	E	M	G	A	N	F	R	.	A	G	R	V	I	D	P	R	R	C	L	K	P	V	I	L	T	D	G	P	E	R	V	I	L	A	G	P	I	P	V	T	P	A	S	A	A	Q	R	R	G	R	I	G	R	N	P	A
Template Known Secondary structure		.	.					T						S			S						G	G	G	G	T	T					.		S																S	S	S																						T	S	S		S
Template Predicted Secondary structure		.	.																														.
Template SS confidence
				390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.		.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
		342	.	.	.	.	.	.	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	R	A	L	L	F	V	E	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	E	D	D	Q	Y	V	F	S	G
Template Known Secondary structure		S	S								S
Template Predicted Secondary structure
Template SS confidence
		467	.	.	470	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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