Job Description P0A9P6 Confidence 100.00% Date Thu Jan 5 11:10:55 GMT 2012 Rank 16 Aligned Residues 335 % Identity 20% Template c2va8A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:ski2-type helicase; PDBTitle: dna repair helicase hel308 Resolution 2.30 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		T	F	A	D	L	G	L	K	A	P	I	L	E	A	L	N	D	L	G	Y	E	K	P	S	P	I	Q	A	E	C	I	P	H	.	L	L	N	G	R	D	V	L	G	M	A	Q	T	G	S	G	K	T	A	A	F	S	L	P	L	L	Q	N	L	D	P	E	L	K	A	P	Q	I	L	V	L	A	P	T	R	E
Query Conservation																																			.
Alig confidence																																			.																																				.	.
Template Conservation																																																																							.	.
Template Sequence		P	I	E	D	L	K	L	P	S	N	V	I	E	I	I	K	K	R	G	I	K	K	L	N	P	P	Q	T	E	A	V	K	K	G	L	L	E	G	N	R	L	L	L	T	S	P	T	G	S	G	K	T	L	I	A	E	M	G	I	I	S	F	L	L	K	N	G	G	K	.	.	A	I	Y	V	T	P	L	R	A
Template Known Secondary structure		B	G	G	G	S	S	S										T	T	S			B											T	T	T	T	T	T									T	T	S																	S		S		.	.						S
Template Predicted Secondary structure																																																																							.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70			.	.	.	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	V	Q	V	A	E	A	M	T	D	F	S	K	H	M	R	G	V	N	V	V	A	L	Y	G	G	Q	R	Y	D	V	Q	L	R	A	L	R	Q	G	P	Q	I	V	V	G	T	P	G	R	L	L	D	H	L	K	R	G	T	L	D	L	S	K	L	S	G	L	V	L	D	E	A	D	E	M	L	R	M	G
Query Conservation
Alig confidence																	.	.																	.	.	.																																								.
Template Conservation																	.	.																	.	.	.																																								.
Template Sequence		L	T	N	E	K	Y	L	T	F	K	D	W	E	L	I	.	.	G	F	K	V	A	M	T	S	G	D	Y	D	T	D	D	A	.	.	.	W	L	K	N	Y	D	I	I	I	T	T	Y	E	K	L	D	S	L	W	R	H	R	P	E	W	L	N	E	V	N	Y	F	V	L	D	E	L	H	Y	.	L	N	D	P
Template Known Secondary structure											G	G	G	G	G	G	.	.	T								S		S	S	S			G	.	.	.	G	G	G	G		S																		G	G	G	G	G								S	G	G	G	.	G	G		T
Template Predicted Secondary structure																	.	.																	.	.	.																																								.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.			.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110				.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.															.	230	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	I	E	D	V	E	T	I	M	A	Q	I	P	E	G	H	Q	T	A	L	F	S	A	T	M	P	E	A	I	R	R	I	T	R	R	F	M	K	E	P	Q	E	V	R	I	Q	S	S	V	T	T	R	P	D	I	S	Q	S	Y	W	T	V	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	M	R
Query Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																													.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.
Template Sequence		E	R	G	P	V	V	E	S	V	T	I	R	A	K	R	R	N	L	L	A	L	S	A	T	I	S	N	.	.	Y	K	Q	I	A	K	W	L	G	A	E	P	V	A	T	N	W	R	P	V	P	L	I	E	G	V	I	Y	P	E	R	K	K	K	E	Y	N	V	I	F	K	D	N	T	T	K	K	V	H	G	D
Template Known Secondary structure		T	T													T	S							S			T	T	.	.									T										S	S											S	S	T	T							T	T	S							S	S
Template Predicted Secondary structure																													.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.																																					.	270	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	N	E	A	L	V	R	F	L	E	A	E	D	F	D	A	A	I	I	F	V	R	T	K	N	A	T	L	E	V	A	E	A	L	E	R	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	N	S	A	A	L
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	A	I	I	A	Y	T	L	D	S	L	S	K	N	G	Q	V	L	V	F	R	N	S	R	K	M	A	E	S	T	A	L	K	I	A	N	Y	M	N	F	V	S	L	D	E	N	A	L	S	E	I	L	K	Q	L	D	D	I	E	E	G	G	S	D	E	K	E	L	L	K	S	L	I	S	K	G	V	A	Y	H
Template Known Secondary structure		S											T	T	T								S	S														T	T	T	S	S																T			S	S													T	T	T
Template Predicted Secondary structure
Template SS confidence
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340			.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure																																																																			.	.
Query SS confidence																																																																			.	.
Query Sequence		N	G	D	M	N	Q	A	L	R	E	Q	T	L	E	R	L	K	D	G	R	L	D	I	L	I	A	T	D	V	A	A	R	G	L	D	V	E	R	I	S	L	V	V	N	Y	D	I	P	M	D	S	E	S	Y	V	H	R	I	G	R	T	G	R	A	G	.	.	R	A	G	R	A	L	L	F	V	E	N	R	E
Query Conservation																																																																			.	.
Alig confidence																																															.	.	.																		.	.
Template Conservation																																															.	.	.
Template Sequence		H	A	G	L	S	K	A	L	R	D	L	I	E	E	G	F	R	Q	R	K	I	K	V	I	V	A	T	P	T	L	A	A	G	V	N	L	P	A	R	T	V	I	I	G	D	.	.	.	I	P	I	M	E	Y	K	Q	M	S	G	R	A	G	R	P	G	F	D	Q	I	G	E	S	I	V	V	V	R	D	K	E
Template Known Secondary structure			T	T	S														T	T		S							G	G	G	G	G	S	S				B	S							.	.	.											T	T	B			T	T	T		S									S		G	G
Template Predicted Secondary structure																																															.	.	.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.				.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
		354
Predicted Secondary structure
Query SS confidence
Query Sequence		R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D
Template Known Secondary structure		G
Template Predicted Secondary structure
Template SS confidence
		403

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions