Return to main results Retrieve Phyre Job Id

Job DescriptionP0A9P6
Confidence100.00%DateThu Jan 5 11:10:55 GMT 2012
Rank1Aligned Residues346
% Identity16%Templatec2v1xB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:atp-dependent dna helicase q1; PDBTitle: crystal structure of human recq-like dna helicase
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10 .........20.... .....30.........40.........50.........60.........70.........80
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Query Sequence  FETTFAD. . LGLKAPILEALNDL. GYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVL
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Template Sequence  SPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPAL. . . . . . CSDGFTLVI
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GGGG

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   64.....70.........80.........90.........100.........110.........120........ .130.......
 
   81........90.........100.........110.........120.... .....130...... ...140.........
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Query Sequence  APTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQ. . . . . . GPQIVVGTPGRL. . . . . LDHLKRGTLDLSK
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Template Sequence  CPLISLMEDQLMVLKQL. . . . . GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARR
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   138.140.........150.... .....160.........170.........180.........190.........200.........210..
 
   150.........160.... .....170... ......180.........190.........200... ......210.........220....
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Query Sequence  LSGLVLDEADEMLRM. . GFIEDVETI. . MAQIPEGHQTALFSATMPEAIRRITRRFMK. EPQEVRIQSSVTTRPDISQSY
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Template Sequence  FTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQ
Template Known Secondary structure  TGGGGSTTSTT

GGGGGG
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   213......220.........230.........240.........250.........260.........270.........280.........290..
 
   225....230.........240.. .......250.........260.........270.........280.........290.........300...
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Query Sequence  WTVWGMRKNEALVRFLEA. EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATD
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Template Sequence  KPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV
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   293......300.........310.........320.........330.........340.........350.........360.........370..
 
   304.....310.........320.........330.........340.........350.........360
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Query Sequence  VAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
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Template Sequence  AFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM
Template Known Secondary structure  TS
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   373......380.........390.........400.........410.........420.........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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