Job Description P0A9P6 Confidence 99.94% Date Thu Jan 5 11:10:55 GMT 2012 Rank 85 Aligned Residues 324 % Identity 16% Template c1z63A_ PDB info PDB header:hydrolase/dna complex Chain: A: PDB Molecule:helicase of the snf2/rad54 hamily; PDBTitle: sulfolobus solfataricus swi2/snf2 atpase core in complex2 with dsdna Resolution 3.00 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.					.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																	.	.	.	.
Query SS confidence																	.	.	.	.
Query Sequence		K	P	S	P	I	Q	A	E	C	I	P	H	L	L	N	.	.	.	.	G	R	D	V	L	G	M	A	Q	T	G	S	G	K	T	A	A	F	S	L	P	L	L	Q	N	L	D	P	E	L	K	A	P	Q	I	L	V	L	A	P	T	R	E	L	A	V	Q	V	A	E	A	M	T	D	F	S	K	H	M	R	G
Query Conservation																	.	.	.	.
Alig confidence																	.	.	.	.																			.																							.														.	.	.
Template Conservation																																							.																							.														.	.	.
Template Sequence		N	L	R	P	Y	Q	I	K	G	F	S	W	X	R	F	X	N	K	L	G	F	G	I	C	L	A	D	D	X	G	L	G	K	T	L	Q	T	.	I	A	V	F	S	D	A	K	K	E	N	E	L	T	P	S	L	V	I	C	P	L	.	S	V	L	K	N	W	E	E	E	L	S	K	F	.	.	.	A	P	H
Template Known Secondary structure																				T	T									T	T	S							.										T	T			S	S							S	.	T	T												.	.	.		T	T
Template Predicted Secondary structure																																							.																							.														.	.	.
Template SS confidence
		443	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.		.	.	.	.	.	.	.	.	510	.	.	.	.				.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	V	V	A	L	Y	G	G	Q	R	Y	D	V	Q	L	R	A	L	R	Q	G	P	Q	I	V	V	G	T	P	G	R	L	L	D	H	L	K	R	G	T	L	D	L	S	K	L	S	G	L	V	L	D	E	A	D	E	M	L	R	M	G	F	I	E	D	V	E	T	I	M	A	Q	I	P	E	G	H	Q	T
Query Conservation
Alig confidence																.	.	.	.	.																													.	.	.											.	.
Template Conservation																.	.	.	.	.																													.	.	.											.	.
Template Sequence		L	R	F	A	V	F	H	E	D	R	S	K	I	K	.	.	.	.	.	L	E	D	Y	D	I	I	L	T	T	Y	A	V	L	L	R	D	T	R	L	K	E	V	E	W	K	Y	I	.	.	.	V	I	D	E	A	Q	N	I	K	N	.	.	P	Q	T	K	I	F	K	A	V	K	E	L	K	S	K	Y	R	I
Template Known Secondary structure		S						S	S	S	T	T	S			.	.	.	.	.	G	G	G	S	S										T	T						T							.	.	.				T	G	G	G	G	S		.	.	T	T	S								T	S
Template Predicted Secondary structure																.	.	.	.	.																													.	.	.											.	.
Template SS confidence
		518	.	520	.	.	.	.	.	.	.	.	.	530	.						.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.				560	.	.	.	.	.	.	.	.	.			570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.																																										.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	L	F	S	A	T	M	P	E	A	I	R	R	I	T	R	R	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	K	E	P	Q	E	V	R	I	Q	S	S	V	T	T	R	P	D	I	S	Q
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	L	T	G	T	P	I	E	N	K	V	D	D	L	W	S	I	X	T	F	L	N	P	G	L	L	G	S	Y	S	E	F	K	S	K	F	A	T	P	I	K	K	G	D	N	X	A	K	E	E	L	K	A	I	I	S	P	F	I	L	R	R	T	K	Y	D	K	A	I	I	N	D	L	P	D	K	I	E	T	N
Template Known Secondary structure					S	S		S	T	T													S	T	T	T	T								T	T	T						T	T													T	T	T						T	T						T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		588	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.
		223	.	.	.	.	.	.	230	.																																																								.	.	.	.	.	.	.	.	240	.	.			.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Query Sequence		S	Y	W	T	V	W	G	M	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	N	E	A	L	V	R	F	L	E	A	.	.	E	D	F
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template Conservation
Template Sequence		V	Y	C	N	L	T	P	E	Q	A	A	X	Y	K	A	E	V	E	N	L	F	N	N	I	D	S	V	T	G	I	K	R	K	G	X	I	L	S	T	L	L	K	L	K	Q	I	V	D	H	P	A	L	L	K	G	G	E	Q	S	V	R	R	S	G	K	X	I	R	T	X	E	I	I	E	E	A	L	D	E	G
Template Known Secondary structure																						T	T	T	T	T	T			T																		T	T		T						S				S	T	T																T	T	T
Template Predicted Secondary structure
Template SS confidence
		668	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.		.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure																									.																									.
Query SS confidence																									.																									.
Query Sequence		D	A	A	I	I	F	V	R	T	K	N	A	T	L	E	V	A	E	A	L	E	R	N	.	G	Y	N	S	A	A	L	N	G	D	M	N	Q	A	L	R	E	Q	T	L	E	R	L	K	.	D	G	R	L	D	I	L	I	A	T	D	V	A	A	R	G	L	D	V	E	R	I	S	L	V	V	N	Y	D	I	P
Query Conservation																									.																									.
Alig confidence																									.																									.
Template Conservation
Template Sequence		D	K	I	A	I	F	T	Q	F	V	D	X	G	K	I	I	R	N	I	I	E	K	E	L	N	T	E	V	P	F	L	Y	G	E	L	S	K	K	E	R	D	D	I	I	S	K	F	Q	N	N	P	S	V	K	F	I	V	L	S	V	K	A	G	F	G	I	N	L	T	S	A	N	R	V	I	H	F	D	R	W
Template Known Secondary structure									S																	T								T	T	S																T	T																	T	T		S					S	S
Template Predicted Secondary structure
Template SS confidence
		748	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	S	E	S	Y	V	H	R	I	G	R	T	G	R	A	G	R	A	G	R	A	L	L	F	V	E	N	R	E	R	R	L	L	R	N	I	E	R	T	M	K	L	T	I	P
Query Conservation
Alig confidence						.	.	.
Template Conservation						.	.	.
Template Sequence		W	N	P	D	.	.	.	Q	A	T	D	R	V	Y	R	I	G	Q	T	R	N	V	I	V	H	K	L	I	S	V	G	T	L	E	E	K	I	D	Q	L	L	A	F	K	R	S
Template Known Secondary structure		S				.	.	.					T	T	T	T	T	T	T	T	S										T	T	S					T					T	T		S	S
Template Predicted Secondary structure						.	.	.
Template SS confidence
		829	830	.	.				.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.