 |
Job Description | P0A9P6 | Confidence | 97.56% | Date | Thu Jan 5 11:10:55 GMT 2012 |
Rank | 150 | Aligned Residues | 81 |
% Identity | 22% | Template | c1w36G_ |
PDB info |
PDB header:recombination | Chain: G: PDB Molecule:exodeoxyribonuclease v alpha chain; |
PDBTitle: recbcd:dna complex
|
Resolution | 3.1 Å |
|
 |
  |   |
13 | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | |
|
. | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | |
|
. | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
| . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . |
|
|
|
|
|  |  |  |  |  |  |
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | K | A | P | I | L | E | A | L | N | D | L | G | Y | E | K | . |
. |
P | S | P | I | Q | A | E | C | I | P | H | L | L | N | G | R | D | V | L | G | M | A | Q | T | G | S | G | K | T | A | A | F | S | L | P | L | L | Q | N | L | D | P | . |
. |
E | L | K | A | P | Q | I | L | V | L | A | P | T | R | E | L | A | V |
Query Conservation |   |
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   | . | . |   |   |   |   |
|   |   |   |
|   |   |
|
|   |
|   |   |   |
|   |   |
|   |
|
|
|
|
|
|   |   |   |   |
|   |   |
|   |   |
|   |   | . | . |   |   |   |   |   |   |   |
|
|
|   |
|
|   |   |
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |
|
|   |
|   |
|
|
|
|
|
|   |   |
| . |   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|
|
|
|
|
|   |
Template Sequence |   |
V | D | E | A | L | L | A | Q | T | L | D | K | L | F | P | V | S | D | E | I | N | W | Q | K | V | A | A | A | V | A | L | T | R | R | I | S | V | I | S | G | G | P | G | T | G | K | T | T | T | V | . |
A | K | L | L | A | A | L | I | Q | M | A | D | G | E | R | C | R | I | R | L | A | A | P | T | G | K | A | A | A |
Template Known Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  | T | T |
|
|
| T | T | S |
|
|  |  |  |  |  |  |  |  |  |  | T | B | S |  |  |  |  |  |
|
| T | T | S | T |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  | T |
| S | S | S |
|
|
|  |  |  |  | B | S | S |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
132 | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | |
. | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 |
  |
  |   |
89 | 90 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
Query Sequence |   |
Q | V | A | E | A | M |
Query Conservation |   |
|   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
Template Conservation |   |
  |
|   |   |   |   |
Template Sequence |   |
R | L | T | E | S | L |
Template Known Secondary structure |   |
 |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
  |   |
211 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|