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Job DescriptionP0A9P6
Confidence100.00%DateThu Jan 5 11:10:55 GMT 2012
Rank10Aligned Residues358
% Identity39%Templatec1hv8B_
PDB info PDB header:rna binding proteinChain: B: PDB Molecule:putative atp-dependent rna helicase mj0669; PDBTitle: crystal structure of a dead box protein from the2 hyperthermophile methanococcus jannaschii
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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Query Sequence  TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR. DVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRE
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Template Sequence  NFNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELV. NENNGIEAIILTPTRE
Template Known Secondary structure  SGGGSS

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   7..10.........20.........30.........40.........50.........60......... 70.........80.....
 
   86...90.........100.........110.........120.........130.........140.........150.........160.....
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Query Sequence  LAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMG
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Template Sequence  LAIQVADEIESLKGNK. NLKIAKIYGGKAIYPQIKALKN. ANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEXLNXG
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   86...90.........100. ........110.........120... ......130.........140.........150.........160...
 
   166...170.........180.........190.........200.........210.........220.........230.........240.....
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Query Sequence  FIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDF
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Template Sequence  FIKDVEKILNACNKDKRILLFSATXPREILNLAKKYXGDYSFIKAKINANIEQSYVEV. . . . . NENERFEALCRLLKNKE
Template Known Secondary structure  TTS
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   164.....170.........180.........190.........200.........210.........220. ........230........
 
   246...250.........260.........270.........280.........290.........300.........310.........320.....
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Query Sequence  DAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMD
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Template Sequence  FYGLVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVXSRGIDVNDLNCVINYHLPQN
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   239240.........250.........260.........270.........280.........290.........300.........310........
 
   326...330.........340.........350.........360.........370..
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Query Sequence  SESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVE
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Template Sequence  PESYXHRIGRTGRAGKKGKAISIINRREYKKLRYIERAXKLKIKKLK
Template Known Secondary structure  STTT

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   319320.........330.........340.........350.........360.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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