Phyre 2 alignment of P0A9P6 with c1cu1B

Job Description P0A9P6
Confidence 99.93% Date Thu Jan 5 11:10:55 GMT 2012

Rank 86 Aligned Residues 262

% Identity 24% Template c1cu1B_

PDB info PDB header:hydrolase Chain: B: PDB Molecule:protein (protease/helicase ns3); PDBTitle: crystal structure of an enzyme complex from hepatitis c2 virus

Resolution 2.50 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	G	R	D	V	L	G	M	A	Q	T	G	S	G	K	T	A	A	F	S	L	P	L	L	Q	N	L	D	P	E	L	K	A	P	Q	I	L	V	L	A	P	T	R	E	L	A	V	Q	V	A	E	A	M	T	D	F	S	K	H	M	R	G	V	N	V	V	A	L	Y	G	G	Q	R	Y	D	V	Q	L	R	A
Query Conservation
Alig confidence																										.	.	.	.	.	.																											.	.	.	.												.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.																											.	.	.	.												.	.	.	.	.	.	.
Template Sequence	S	F	Q	V	A	H	L	H	A	P	T	G	S	G	K	S	T	K	V	P	A	A	Y	A	A	.	.	.	.	.	.	Q	G	Y	K	V	L	V	L	N	P	S	V	A	A	T	L	G	F	G	A	Y	M	S	K	A	H	.	.	.	.	G	I	D	P	N	I	R	T	G	V	R	.	.	.	.	.	.	.	T
Template Known Secondary structure	S										T	T	S		T	T	T									.	.	.	.	.	.	T	T								S																	.	.	.	.									S	S		.	.	.	.	.	.	.
Template Predicted Secondary structure																										.	.	.	.	.	.																											.	.	.	.												.	.	.	.	.	.	.
Template SS confidence
	1196	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220							.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.					.	.	.	1250	.	.	.	.	.	.	.								.

	122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.		.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure																																													.
Query SS confidence																																													.
Query Sequence	L	R	Q	G	P	Q	I	V	V	G	T	P	G	R	L	L	D	H	L	K	R	G	T	L	D	L	S	K	L	S	G	L	V	L	D	E	A	D	E	M	L	R	M	G	.	F	I	E	D	V	E	T	I	M	A	Q	I	P	E	G	H	Q	T	A	L	F	S	A	T	M	P	E	A	I	R	R	I	T	R	R
Query Conservation																																													.
Alig confidence																.	.	.																											.																										.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.																																																					.	.	.	.	.	.	.	.	.	.
Template Sequence	I	T	T	G	A	P	V	T	Y	S	T	Y	G	K	F	.	.	.	L	A	D	G	G	C	S	G	G	A	Y	D	I	I	I	C	D	E	C	H	S	T	D	S	T	T	I	L	G	I	G	T	V	L	D	Q	A	E	T	A	G	A	R	L	V	V	L	A	T	A	T	P	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						S										.	.	.			T	T	S			T	T	S		S					T	T	T	T			S														T	T	T	T	T		S							S	S		.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																.	.	.																																																					.	.	.	.	.	.	.	.	.	.
Template SS confidence
	1259	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.				.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.

	201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence	F	M	K	E	P	Q	E	V	R	I	Q	S	S	V	T	T	R	P	D	I	S	Q	S	Y	W	T	V	W	G	M	R	K	N	E	A	L	V	R	F	L	E	A	E	D	F	D	A	A	I	I	F	V	R	T	K	N	A	T	L	E	V	A	E	A	L	E	R	N	G	Y	N	S	A	A	L	N	G	D	M	N
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	P	G	S	V	T	V	P	H	P	N	I	E	E	V	A	L	S	N	T	G	E	I	P	F	Y	G	K	A	I	P	I	E	A	I	R	G	G	R	H	L	I	F	C	H	S	K	K	K	C	D	E	L	A	A	K	L	S	G	L	G	I	N	A	V	A	Y	Y	R	G	L	D
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	T	T							T	T								S		S	S				T	T					G	G	G	T	S	S	S							S	S														T	T								T	T	S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.
Template SS confidence
										1326	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.

	281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.									320	.	.														.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	Q	A	L	R	E	Q	T	L	E	R	L	K	D	G	R	L	D	I	L	I	A	T	D	V	A	A	R	G	L	D	V	E	R	I	S	L	V	V	N	.	.	.	.	.	.	.	.	Y	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	P	M	D	S	E	S	Y	V	H	R	I	G	R	T	G	R	A
Query Conservation																																								.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.																						.								.	.	.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation				.	.	.	.	.	.	.																						.																																																.
Template Sequence	V	S	V	.	.	.	.	.	.	.	I	P	T	I	G	D	V	V	V	V	A	T	D	A	L	M	T	G	Y	T	G	.	D	F	D	S	V	I	D	C	N	T	C	V	T	Q	T	V	D	F	S	L	D	P	T	F	T	I	E	T	T	T	V	P	Q	D	A	V	S	R	S	Q	R	R	G	R	T	G	R	.
Template Known Secondary structure	G	G	G	.	.	.	.	.	.	.	S		S	S	S	S							T	T								.			S																		S	S	S											B									T	T	S		S	.
Template Predicted Secondary structure				.	.	.	.	.	.	.																						.																																																.
Template SS confidence
	1397	.	.								1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420		.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.

	340	.	.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	R	A	G	R	A	L	L	F	V	E	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence	G	R	R	G	I	Y	R	F	V	T	P	G
Template Known Secondary structure	S	S							S
Template Predicted Secondary structure
Template SS confidence
	1468	.	1470	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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