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Job DescriptionP0A9P6
Confidence100.00%DateThu Jan 5 11:10:55 GMT 2012
Rank62Aligned Residues271
% Identity22%Templatec1a1vA_
PDB info PDB header:hydrolase/dnaChain: A: PDB Molecule:protein (ns3 protein); PDBTitle: hepatitis c virus ns3 helicase domain complexed with single2 stranded sdna
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   42.......50.........60.........70.........80.........90.........100.........110.........120.
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Query Sequence  NGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA
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Template Sequence  SFQVAHLHAPTGSGKSTKVPAAYAA. . . . . . QGYKVLVLNPSVAATLGFGAYMSKAH. . . . GVDPNIRTGV. . . . . . . RT
Template Known Secondary structure  S


TTS
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   196...200.........210.........220 .........230.........240...... ...250...... ..
 
   122.......130.........140.........150.........160.........170... ......180.........190.........200
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Query Sequence  LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETI. MAQIPEGHQTALFSATMPEAIRRITRR
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Template Sequence  ITTGSPITYSTYGKFLA. . . . DGGSGGAYDIIICDECHSTDATSILGIGTVLDQAETAGARLVVLATAT. . . . . . . . . . .
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S....TT





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   259260.........270..... ....280.........290.........300.........310.........320...
 
   201........210.........220.........230.........240.........250.........260.........270.........280
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Query Sequence  FMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMN
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Template Sequence  . . . . . . . . PPGSVTVPHPNIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLD
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TT

S
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   325....330.........340.........350.........360.........370.........380.........390......
 
   281........290. ........300......... 310.........320.........330.........340.........350.
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Query Sequence  QALREQTLERL. . . . . . . KDGRLDILIATDVAARGL. . DVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVEN
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Template Sequence  VSVIPTSGDVVVVATDALFTGDFDSVIDCNTVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGR. GKPGIYRFVAPG
Template Known Secondary structure  GGGS
SSSS
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BS






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BTTB
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   397..400.........410.........420.........430.........440.........450.........460... ......470.....
 
   352.
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Query Sequence  RE
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Template Conservation    
Template Sequence  ER
Template Known Secondary structure 
B
Template Predicted Secondary structure 
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   480.
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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