Return to main results Retrieve Phyre Job Id

Job DescriptionP00350
Confidence96.78%DateThu Jan 5 10:56:33 GMT 2012
Rank355Aligned Residues122
% Identity13%Templatec3tozA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:shikimate dehydrogenase; PDBTitle: 2.2 angstrom crystal structure of shikimate 5-dehydrogenase from2 listeria monocytogenes in complex with nad.
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20....... ..30.........40.........50 .........60.........70.
Predicted Secondary structure 









.







........








Query SS confidence 


























.






















. . . . . . . .




















Query Sequence  MSKQQIGVVGMAVMGRNLALNIESRGY. TVSIFNRSREKTEEVIAENPGKK. . . . . . . . LVPYYTVKEFVESLETPRRIL
Query Conservation 
 

 






 

  

 

   
 . 
 



       
   

   ........   
 
  
 
  
    


Alig confidence 


























.






















........




















Template Conservation     
 












  

   
   
 
 


                                        



Template Sequence  IIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFT
Template Known Secondary structure 
TTS

ST


SSTTSS
TT
T
S
Template Predicted Secondary structure 
























Template SS confidence 















































































   128.130.........140.........150.........160.........170.........180.........190.........200.......
 
   72....... 80.........90.........100.........110.........120....
Predicted Secondary structure 


..













Query SS confidence 







. .












































Query Sequence  LMVKAGAG. . TDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIG
Query Conservation 
 

    ..
  

  
   
  
 



 

     
   
  
   

 


Alig confidence 







..


























..















Template Conservation 



 
  
                  
 
  
 
  ..
 
   
   
   
 
Template Sequence  NATGVGMKPFEGETLLPSADMLRPELIVSDVVYKPTK. . TRLLEIAEEQGCQTLN
Template Known Secondary structure 
SSTTSTTSTT

S


GGG

TT
S

SSSS..
TT

Template Predicted Secondary structure 


























..





Template SS confidence 






















































   208.210.........220.........230.........240.... .....250.........260
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions