Return to main results Retrieve Phyre Job Id

Job DescriptionP00350
Confidence99.94%DateThu Jan 5 10:56:33 GMT 2012
Rank29Aligned Residues204
% Identity17%Templatec3gg2B_
PDB info PDB header:oxidoreductaseChain: B: PDB Molecule:sugar dehydrogenase, udp-glucose/gdp-mannose PDBTitle: crystal structure of udp-glucose 6-dehydrogenase from2 porphyromonas gingivalis bound to product udp-glucuronate
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40....... ..50.........60.......
Predicted Secondary structure 











................










Query SS confidence 











































. . . . . . . . . . . . . . . .



















Query Sequence  QQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENP. . . . . . . . . . . . . . . . GKKLVPYYTVKEFVESLETP
Query Conservation 
 






 

  

 

   
  
 



       
   

................      
 
  
 
  
   
Alig confidence 











































................

















..
Template Conservation 


 




 

   
  

  
  
   
     
  
  
     
               
  
    

   

..
Template Sequence  LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEAD. .
Template Known Secondary structure 


STT

S
TT

SS

TTTTSS
GGG
S..
Template Predicted Secondary structure 


























..
Template SS confidence 















































































   7980.........90.........100.........110.........120.........130.........140.........150......
 
   68.70....... ..80.........90.........100.........110........ .120...... ..
Predicted Secondary structure 



.........











........



..

Query SS confidence 









. . . . . . . . .








































. . . . . . . .







. .

Query Sequence  RRILLMVKAG. . . . . . . . . AGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAE. . . . . . . . GFNFIGTG. . VS
Query Conservation   



 

  .........  
  

  
   
  
 



 

     
   
  
   ........

 




..

Alig confidence  .








.........








































........







..

Template Conservation  .



 
 

       
   
      

  
    


  


 



  
   
 
         
  
   

   
Template Sequence  . IIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASNPEFLK
Template Known Secondary structure  .




B
TTSSB



S


S


TTTT










Template Predicted Secondary structure  .




































Template SS confidence 















































































   157..160.........170.........180.........190.........200.........210.........220.........230.....
 
   129130....... ..140.... .....150.........160.........170.........180.........190.........200.....
Predicted Secondary structure 



.


..












Query SS confidence 








.






. .




























































Query Sequence  GGEEGALKG. PSIMPGG. . QKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLK
Query Conservation 

  

  
.






..
 

 
 
 


  


    
   
   
  



 





 


  

 



  

 
Alig confidence 








.






..
















.........

































.
Template Conservation   
 
         

 
            
      .........
       

  

  
      

  

   
 .
Template Sequence  EGNAIDDFMKPDRVVVGVDSDRARELITSLYKPMLR. . . . . . . . . VLFMDIASAEMTKYAANAMLATRISFMNDVANLC.
Template Known Secondary structure  TTSS
S

SSTTT

.........
.
Template Predicted Secondary structure 












.........

.
Template SS confidence 















































































   236...240.........250.........260.........270. ........280.........290.........300.....
 
   206...210.........220
Predicted Secondary structure 



Query SS confidence 














Query Sequence  GGLNLTNEELAQTFT
Query Conservation     

    

 

 
Alig confidence 














Template Conservation 
  


   
     
Template Sequence  ERVGADVSMVRLGIG
Template Known Secondary structure  T

Template Predicted Secondary structure 



Template SS confidence 














   310.........320....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions