Job Description P00350 Confidence 99.92% Date Thu Jan 5 10:56:33 GMT 2012 Rank 36 Aligned Residues 209 % Identity 16% Template c3g79A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:ndp-n-acetyl-d-galactosaminuronic acid dehydrogenase; PDBTitle: crystal structure of ndp-n-acetyl-d-galactosaminuronic acid2 dehydrogenase from methanosarcina mazei go1 Resolution 2.40 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.					.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.																.
Predicted Secondary structure																									.	.												.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.												.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	Q	I	G	V	V	G	M	A	V	M	G	R	N	L	A	L	N	I	E	S	R	G	.	.	Y	T	V	S	I	F	N	R	S	R	E	.	.	.	.	K	T	E	E	V	I	A	E	N	P	G	K	K	L	V	P	Y	Y	T	V	K	E	F	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E
Query Conservation																									.	.												.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.												.	.	.	.						.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.
Template Sequence		K	K	I	G	V	L	G	M	G	Y	V	G	I	P	A	A	V	L	F	A	D	A	P	C	F	E	K	V	L	G	F	Q	R	N	S	K	S	S	G	Y	K	I	E	M	L	.	N	R	G	E	S	P	L	K	G	E	E	P	G	L	E	E	L	I	G	K	V	V	K	A	G	K	F	E	C	T	P	D	F	S
Template Known Secondary structure										S	T	T											S	T	T												T	T	T	T	T						.	T	T	T				S	S			G	G	G											T	T						S		G	G
Template Predicted Secondary structure																																															.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.												.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.									.	120	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.
Query Sequence		S	L	E	T	P	R	R	I	L	L	M	V	K	A	G	.	.	.	.	.	.	.	.	.	.	.	A	G	T	D	A	A	I	D	S	L	K	P	Y	L	D	K	G	D	I	I	I	D	G	G	N	T	F	F	Q	D	T	I	R	R	N	R	E	L	S	A	E	.	.	.	.	.	.	.	.	G	F	N	F	I
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	I	S	E	L	D	A	V	T	L	A	I	Q	T	P	F	A	N	P	K	D	L	E	P	D	F	S	A	L	I	D	G	I	R	N	V	G	K	Y	L	K	P	G	M	L	V	V	L	E	S	T	I	T	P	G	T	T	E	G	M	A	K	Q	I	L	E	E	E	S	G	L	K	A	G	E	D	F	A	L	A
Template Known Secondary structure		G	G	G	G		S												S	S			S	S																			T	T							S				T	T	T	T	T	T														B	T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.		.	.				140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.			.	.	.
Query SS confidence																.			.	.	.
Query Sequence		G	T	G	V	S	G	G	E	E	G	A	L	K	G	.	P	S	.	.	.	I	M	P	G	G	Q	K	E	A	Y	E	L	V	A	P	I	L	T	K	I	A	A	V	A	E	D	G	E	P	C	V	T	Y	I	G	A	D	G	A	G	H	Y	V	K	M	V	H	N	G	I	E	Y	G	D	M	Q	L	I	A	E
Query Conservation																.			.	.	.
Alig confidence																.			.	.	.																										.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.
Template Sequence		H	A	P	E	R	V	M	V	G	R	L	L	K	N	I	R	E	H	D	R	I	V	G	G	I	D	E	A	S	T	K	R	A	V	E	L	Y	S	P	V	L	T	V	G	Q	.	.	.	.	.	.	V	I	P	M	S	A	T	A	A	E	V	T	K	T	A	E	N	T	F	R	D	L	Q	I	A	A	I	N	Q
Template Known Secondary structure									T	T	S								S							S	S												G	G	G		S	S			.	.	.	.	.	.
Template Predicted Secondary structure																																															.	.	.	.	.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.							.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	S	L	L	K	G	G	L	N	L	T	N	E	E	L	A	Q	T	F	T
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence		L	A	L	Y	C	.	E	A	M	G	I	N	V	Y	D	V	R	T	G	V	D
Template Known Secondary structure							.			T	T
Template Predicted Secondary structure							.
Template SS confidence
		252	.	.	.	.		.	.	.	260	.	.	.	.	.	.	.	.	.	270	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions